donovan-h-parks CompareM issues

donovan-h-parks / CompareM

A toolbox for comparative genomics.

GNU General Public License v3.0

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issues

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new diamond v2.0.14 sensitive mode nothing returned

#40 jianshu93 opened 2 years ago
0
Where I can get the example files?

#39 swmuyu opened 2 years ago
0
gsort for macOS instead of sort?

#38 jianshu93 opened 3 years ago
1
Non reciprocal AAI

#37 drs opened 3 years ago
0
diamond is not on the system path.

#36 liuqian666 closed 4 years ago
2
self.logger.error(f'Unrecognized image format: {img_format}')

#35 gamlopez opened 4 years ago
4
Failed to process sequence file

#34 taracj36 opened 4 years ago
1
Could I calculate AAI of eukaryotes by CompareM?

#33 DustinChen1986 closed 4 years ago
2
aai workflow results gives 0 orthologous and 0 mean AAI

#32 mosassi opened 4 years ago
2
TypeError: cannot unpack non-iterable NoneType object

#31 dikshyantg opened 4 years ago
1
comparem heat map error, prodigal default meta?

#30 jianshu93 opened 4 years ago
0
Is the input file required to be a CDS file？

#29 fujch7 opened 4 years ago
6
Py3 port

#28 donovan-h-parks closed 4 years ago
0
AttributeError: 'Diamond' object has no attribute 'make_database'

#27 fujch7 closed 4 years ago
5
install issue : Segmentation fault (core dumped)

#26 Diamonds95 closed 4 years ago
3
missing comparison in aai output file

#25 ghost closed 5 years ago
2
lgt analysis

#24 ghost closed 4 years ago
1
AttributeError: 'NoneType' object has no attribute 'iteritems'

#23 Felixseetoo closed 4 years ago
3
Installation problem

#22 Felixseetoo closed 5 years ago
2
installation

#21 chloelulu closed 5 years ago
0
No genomes found in directory

#20 LinXuZJU closed 4 years ago
2
ERROR:Input file does not exists

#19 FlamySYSU closed 4 years ago
1
[WIP] update to work on py3

#18 ctb closed 6 years ago
1
Can I customize the order of the target genome files in the aai_wf result? Or can you get the full matrix of pairwise AAI distance?

#17 zhssakura closed 4 years ago
3
A quickstart running on Mac OS X

#16 ctb opened 6 years ago
10
kmer_usage error

#15 slhogle closed 4 years ago
12
Orthologs not found

#14 annalisa14 closed 4 years ago
10
Convert to Python3

#13 ralic opened 7 years ago
0
Problem with missing values

#12 sbridel closed 7 years ago
5
Can you please specify format file input

#11 sbridel closed 7 years ago
4
Runnning comparem issue

#10 sbridel closed 7 years ago
6
No pairwise aai statistics come out.

#9 minsookim1983 closed 7 years ago
6
Self hits do not have 100% OF

#8 donovan-h-parks opened 7 years ago
2
Heatmap

#7 jarrodscott closed 4 years ago
1
can't find orthologs between genomes

#6 ceya closed 7 years ago
17
install issue

#5 jarrodscott closed 8 years ago
3
biolib>=0.0.8

#4 jfkell05 closed 8 years ago
2
Improvements to heatmap

#3 ctSkennerton closed 9 years ago
1
Add in a heatmap plotting command

#2 ctSkennerton closed 9 years ago
1
Error in AAI calculation

#1 ctSkennerton closed 9 years ago
4