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dputhier
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scigenex
This repository stores the scigenex R library.
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gene_clustering() should propose an alternative path to temporary files
#146
dputhier
opened
1 month ago
0
gene_clustering() should delete temporary file by default
#145
dputhier
opened
1 month ago
0
Fix error when one cluster is empty in plot_cmp_genesets()
#144
dputhier
opened
5 months ago
0
Update for Seurat V5
#143
Delphine-Potier
opened
9 months ago
1
Doc should be updated (1.4.10 to 1.4.11)
#142
dputhier
opened
10 months ago
0
Error: no slot of name "data" for this object of class "Assay5"
#141
dputhier
closed
10 months ago
1
there is no package called ‘xlsx’
#140
dputhier
closed
10 months ago
1
Doc is 1.4.8 (should be 1.4.9)
#139
dputhier
closed
10 months ago
1
Doc 1.4.9
#138
dputhier
closed
10 months ago
0
xlxs dependency
#137
dputhier
closed
10 months ago
1
Documentation is outdated
#136
dputhier
closed
11 months ago
0
Error: pandoc document conversion failed with error 137
#135
lionel-spinelli
closed
1 year ago
2
Error when saving multiple HTML reports of gene modules
#134
lionel-spinelli
closed
1 year ago
4
Control the level of verbosity
#133
lionel-spinelli
closed
1 year ago
3
Rename k to k_g in gene_clustering()
#132
JulieBvs
closed
1 year ago
1
cluster_set_from_matrix is slow with large datasets
#131
dputhier
closed
1 year ago
1
top_genes is very slow with large datasets
#130
dputhier
closed
1 year ago
1
top_genes(cs, top = 10)
#129
dputhier
closed
1 year ago
1
cluster_set_from_matrix is too slow.
#128
dputhier
closed
1 year ago
0
select_genes() could accept anndata
#127
dputhier
opened
1 year ago
0
Need to change plot_heatmap description
#126
JulieBvs
closed
1 year ago
0
Error plot_clusters_stat
#125
JulieBvs
closed
1 year ago
1
Error when installing the package
#124
JulieBvs
closed
1 year ago
1
Add a parameter to plot_clust_enrichments to manage the number of character per line
#123
JulieBvs
closed
1 year ago
2
Create a report
#122
JulieBvs
closed
1 year ago
1
Need an argument to control colors of cell pop in plot_heatmap()
#121
dputhier
closed
1 year ago
0
Create a function to compute the level of dispersion of a cell/spot class
#120
dputhier
opened
1 year ago
0
Function to integrate markers (Michael's work)
#119
dputhier
closed
1 year ago
1
Function for reconstructing network
#118
dputhier
opened
1 year ago
0
Need a function to export gene list in excel format.
#117
dputhier
closed
1 year ago
0
Need to change kendall dist
#116
dputhier
closed
1 year ago
1
The top_gene fonction could select top_genes according to their functions
#115
dputhier
closed
1 year ago
1
top_genes / cluster_set_from_seurat
#114
dputhier
closed
1 year ago
1
The heatmap created by plot_heatmap function is so large the title wont appear
#113
mchainavail
closed
1 year ago
0
The heatmap generated by plot_heatmap function leaves no places for a title
#112
mchainavail
closed
1 year ago
0
The heatmap generated by plot_heatmap function leaves no places for a title
#111
mchainavail
closed
1 year ago
0
The heatmap generated by plot_heatmap function leaves no places for a title
#110
mchainavail
closed
1 year ago
1
The heatmap generated by plot_heatmap function leaves no places for a title
#109
mchainavail
closed
1 year ago
0
The heatmap generated by plot_heatmap function leaves no places for a title
#108
mchainavail
closed
1 year ago
0
filter_cluster_size with "min_cluster_size = 5" should keep a cluster with size == 5
#107
dputhier
closed
1 year ago
1
The graph should be stored in the object.
#106
dputhier
opened
1 year ago
0
gene_clustering methods (1 & 2) should be clarified in the help section
#105
dputhier
opened
1 year ago
1
No col ordering for plot_heatmap
#104
JulieBvs
closed
1 year ago
1
Add agglomerative methods arg to plot_heatmap
#103
JulieBvs
closed
1 year ago
1
Enable to plot heatmap when there is a single gene cluster
#102
JulieBvs
closed
1 year ago
1
Enable to easily add column annotation with add_col_annotation
#101
JulieBvs
closed
11 months ago
0
Error when line_size_vertical is set to 0
#100
JulieBvs
closed
11 months ago
2
The code of the filter_by_size could be greatly simplified
#99
dputhier
closed
1 year ago
1
distance_method="kendall"
#98
dputhier
closed
1 year ago
2
filter_nb_supporting_cells should be refactored.
#97
dputhier
closed
1 year ago
1
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