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dr-joe-wirth
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phantasm
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
MIT License
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update LPSN data
#21
dr-joe-wirth
opened
5 months ago
0
additional data sanity checks
#20
dr-joe-wirth
opened
5 months ago
0
core gene error handling
#19
dr-joe-wirth
opened
8 months ago
0
Phantasm Installation which works for me
#18
bharat1912
closed
1 year ago
1
add a `check` job to evaluate if phantasm and dependencies are properly installed
#17
dr-joe-wirth
closed
1 year ago
0
Failed SSL hello
#16
astrodea
closed
1 year ago
2
human_map.txt file and outgroup
#15
bharat1912
closed
1 year ago
9
getPhyloMarker error
#14
bharat1912
closed
1 year ago
2
run `rankPhyloMarkers` without running `analyzeGenomes` or `knownPhyloMarker` first
#13
dr-joe-wirth
opened
1 year ago
0
NCBI timeout when using multiple markers
#12
astrodea
closed
1 year ago
8
Error for create makeSpeciesTreeWorkDir
#11
luisruis
closed
8 months ago
8
Error in Option 2: unknown reference genomes and known phylogenetic marker
#10
luisruis
closed
1 year ago
6
make a conda installation
#9
dr-joe-wirth
closed
10 months ago
1
Stuck in the step of "Finding missing relationships and updating the Taxonomy object"
#8
yisuo1994
closed
1 year ago
7
AttributeError(ERR 1) Taxonomy objects in the list must be at their root
#7
thisisliuqing
closed
1 year ago
8
naming an input genome as an accession number can cause failure in getPhyloMarkers and refinePhylogeny
#6
dr-joe-wirth
closed
1 year ago
0
add log file
#5
dr-joe-wirth
closed
1 year ago
0
add Singularity support
#4
dr-joe-wirth
closed
1 year ago
0
create workflow for identifying phylogenetic markers in user-specified genomes
#3
dr-joe-wirth
closed
1 year ago
0
convert some parameters to flags
#2
dr-joe-wirth
closed
1 year ago
0
Code Quality, Python Suggestions
#1
rkrishnasanka
closed
5 months ago
0