dstreett Super-Deduper issues

dstreett / Super-Deduper

An application to remove PCR duplicates from high throughput sequencing runs.

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issues

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Deduplicating following adapter and quality trimming with Cutadapt

#43 KmKingsland closed 7 years ago
2
Previous super_deduper version

#42 madzafv closed 7 years ago
1
super_deduper: realloc(): invalid next size: 0x0000000000cb6890

#41 cogillsb opened 7 years ago
1
Many duplicates (unexpected)

#40 adomingues opened 8 years ago
6
Develop

#39 bioSandMan closed 8 years ago
0
Should also allow RC not to be checked.

#38 msettles opened 8 years ago
0
sd.log is created even when run without parameters

#37 samhunter opened 8 years ago
0
New bin

#36 dstreett closed 8 years ago
0
Testing

#35 bioSandMan closed 8 years ago
5
More descriptive output for testSD.py

#34 dstreett opened 8 years ago
1
Add RC into develop.

#33 dstreett opened 8 years ago
1
Seg fault on Macs but not Linux

#32 dstreett closed 8 years ago
1
modified range of acceptable quality values

#31 samhunter closed 8 years ago
1
Documentation

#30 samhunter opened 8 years ago
0
Total_Time appears to be an int? (Develop)

#29 samhunter closed 8 years ago
3
Consistency in switches (Develop)

#28 samhunter closed 8 years ago
3
Typo in help

#27 samhunter closed 8 years ago
3
Quality score range isn't correct. (Develop branch)

#26 samhunter closed 8 years ago
1
Output file size is larger than expected

#25 ryanserra opened 8 years ago
3
core dump on execution in Linux

#24 bioSandMan closed 8 years ago
2
Merge testing with develop

#23 bioSandMan closed 8 years ago
1
Testing

#22 bioSandMan closed 8 years ago
1
Functional Testing

#21 dstreett closed 8 years ago
2
compiling under Windows using Cygwin

#20 bioSandMan closed 8 years ago
1
zlib required on install

#19 bioSandMan opened 8 years ago
1
Defaults

#18 bioSandMan opened 8 years ago
0
Removed .swp files and .gz

#17 dstreett closed 8 years ago
0
gzip compression level?

#16 sklages closed 8 years ago
0
multiple files, space separated doesn't produce an error

#15 msettles opened 8 years ago
0
support for latest illumina fastq formats

#14 waalkes closed 9 years ago
1
[ERROR] out of bounds. Start: 5 End: 14 Length: 1

#13 sklages closed 9 years ago
6
Stdin stdout

#12 dstreett closed 9 years ago
0
Added RC logic

#11 dstreett closed 9 years ago
0
Update folder

#10 dstreett closed 9 years ago
0
Recover Example File

#9 dstreett closed 9 years ago
0
Restored example .gz files

#8 dstreett closed 9 years ago
0
Enhancements

#7 dstreett closed 9 years ago
0
Updated README and updated formating

#6 dstreett closed 9 years ago
0
Commented out some code

#5 dstreett closed 9 years ago
0
gunzip -c was used instead of zcat

#4 dstreett closed 9 years ago
0
Enhancements

#3 dstreett closed 9 years ago
0
Test

#2 dstreett closed 9 years ago
0
Deleted Old Files

#1 dstreett closed 9 years ago
0