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eastgenomics
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eggd_dias_batch
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initial unarchive check doesn't use CNV job ID for excluded intervals bed check
#221
jethror1
opened
3 hours ago
0
panels and single genes in same report don't have a nice separator like multiple genes
#220
jethror1
opened
4 weeks ago
0
IN-930 - update dias_batch.py
#219
jethror1
closed
1 month ago
0
Release v3.2.0 -> main
#218
jethror1
closed
1 month ago
2
IN-930 - combine unarchiving inputs
#217
jethror1
closed
1 month ago
1
IN-930 - update default unarchive patterns
#216
jethror1
closed
1 month ago
0
IN-930 - fix #214 single gene report name
#215
jethror1
closed
1 month ago
1
Single gene file naming
#214
rklocke
closed
1 month ago
2
IN-930 add new input unarchive only
#213
jethror1
closed
1 month ago
0
IN-930 - add multiqc html pattern to defaults.py
#212
jethror1
closed
1 month ago
0
IN-930 - update readme
#211
jethror1
closed
1 month ago
0
IN-930 - update .coveragerc path
#210
jethror1
closed
1 month ago
0
IN-930 - fix #196 better unarchival checking
#209
jethror1
closed
1 month ago
1
DI-930 fix #207 strip whitespace from inputs
#208
jethror1
closed
1 month ago
1
strip leading / trailing whitespace from user string inputs
#207
Addy81
closed
1 month ago
0
Improve description of non-reference file placeholders in the config file design section of README
#206
growland2
closed
1 month ago
0
Unarchive tag incorrect
#205
chrispyatt
closed
2 months ago
2
prettier error message
#204
jethror1
opened
2 months ago
0
DI-930 fix #199 - improve summary text
#203
jethror1
closed
4 months ago
1
DI-930 fix #198 - allow invalid samples in manifest when subsetting
#202
jethror1
closed
4 months ago
1
DI-930 fix #197 - fix skipping samples with missing test codes
#201
jethror1
closed
4 months ago
0
DI-930 fix #195 - correctly check all archived files
#200
jethror1
closed
4 months ago
1
Mismatch in total samples run in summary report
#199
jethror1
closed
1 month ago
1
Subset + manifest validation
#198
Addy81
closed
1 month ago
1
lack of test code in manifest not flagged
#197
chrispyatt
closed
1 month ago
1
Ensure all files unarchived
#196
jethror1
closed
1 month ago
1
batch does not unarchive all files for reanalysis
#195
chrispyatt
closed
1 month ago
7
V3.1.0 release
#194
chrispyatt
closed
6 months ago
1
switch split_tests to default to true
#193
jethror1
closed
6 months ago
0
v3.1.0 - fix reports summary writing
#192
jethror1
closed
7 months ago
1
write_summary_report fails when trying to record excluded file IDs
#191
chrispyatt
closed
6 months ago
0
v3.1.0 - handle manifest with project
#190
jethror1
closed
7 months ago
0
Launches all reports but fails at the end and doesn't output a summary
#189
Addy81
closed
6 months ago
0
v3.1.0 - add running mode to reports folder output name
#188
jethror1
closed
7 months ago
1
Add an option to ignore samples in manifest
#187
Emma-MacK
opened
7 months ago
3
mosaic reports output directory doesn't include version/datetime info
#186
chrispyatt
closed
6 months ago
3
v3.1.0 - handle new genepanels
#185
jethror1
closed
7 months ago
0
v3.1.0 - handle dynamic inputs
#184
jethror1
closed
7 months ago
0
v3.1.0 - better handle research use test code
#183
jethror1
closed
7 months ago
0
v3.1.0 - error on multiple configs
#182
jethror1
closed
7 months ago
2
ResearchUse code breaks batch
#181
chrispyatt
closed
6 months ago
5
v3.1.0 - add optional multiqc_report input for eggd_artemis
#180
jethror1
closed
7 months ago
1
pass multiqc report as an input
#179
kjwinfield
closed
6 months ago
0
automate CNV indications stripping
#178
kjwinfield
opened
8 months ago
2
v3.1.0 - tidy up manifest logging
#177
jethror1
closed
8 months ago
0
v3.1.0 - add details on exclude_controls to readme
#176
jethror1
closed
8 months ago
0
v3.1.0 make assay optional, improve logging
#175
jethror1
closed
8 months ago
1
v3.1.0 fix trailing blank line
#174
jethror1
closed
8 months ago
1
add samples specified to exclude to logs
#173
jethror1
closed
6 months ago
0
Readme suggests -iassay is optional
#172
Addy81
closed
6 months ago
1
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