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eastgenomics
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eggd_generate_variant_workbook
DNAnexus app for generating xlsx variant workbooks
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v1.3.1
#46
Yu-jinKim
closed
3 years ago
0
v1.3.0
#45
Yu-jinKim
closed
3 years ago
0
Check if genes are present in g2t earlier
#44
Yu-jinKim
closed
3 years ago
1
v1.2.4
#43
Yu-jinKim
closed
3 years ago
0
v1.2.4
#42
Yu-jinKim
closed
3 years ago
0
Reanalysis reads the manifest before getting the given list of panels/genes
#41
Yu-jinKim
closed
3 years ago
1
Bug fix
#40
Yu-jinKim
closed
3 years ago
0
Python3 use with get_transcript_regions.py causes error
#39
Yu-jinKim
closed
3 years ago
1
Remove hard coded nirvana exons' file
#38
Yu-jinKim
closed
3 years ago
1
Empty variants sheets with wrong fastq naming
#37
Yu-jinKim
closed
3 years ago
3
Workflow id optional
#36
Yu-jinKim
closed
4 years ago
0
Add HGMD, gnomAD, ClinVar annotation to the reports
#35
Yu-jinKim
closed
2 years ago
3
changed timeout from 2 to 6
#34
Yu-jinKim
closed
4 years ago
0
Samples not processed via DNAnexus have no job-id and fails
#33
jethror1
closed
4 years ago
3
App times out with large panels
#32
mattgarner
closed
4 years ago
1
Update vcf2xls_nirvana.pl
#31
mattgarner
closed
4 years ago
0
v1.1.2
#30
mattgarner
closed
4 years ago
0
Re-organised report summary text to be DRYer
#29
mattgarner
closed
4 years ago
0
Updated Dementia text
#28
mattgarner
closed
4 years ago
0
Added line to summary text for Dias pipeline
#27
mattgarner
closed
4 years ago
0
Update dxapp.json
#26
mattgarner
closed
4 years ago
0
Include pipeline version in report text
#25
mattgarner
closed
1 year ago
3
Update vcf2xls_nirvana.sh
#24
mattgarner
closed
4 years ago
0
Panels list needs to be quoted
#23
mattgarner
closed
4 years ago
1
Update vcf2xls_nirvana.pl
#22
mattgarner
closed
4 years ago
0
Disable manifest requirement if panels specified
#21
mattgarner
closed
4 years ago
1
Check sry
#20
Yu-jinKim
closed
4 years ago
0
put decimals back in the panel coverage
#19
Yu-jinKim
closed
4 years ago
0
Fix empty xls
#18
Yu-jinKim
closed
4 years ago
0
If sample name not in the manifest, creates an empty xls
#17
Yu-jinKim
closed
4 years ago
0
1 based exons for the scientists + get unique regions from coverage file
#16
Yu-jinKim
closed
4 years ago
1
remove 5 bp flank addition
#15
Yu-jinKim
closed
4 years ago
0
integers for region coordinates + get exact regions instead of overlap
#14
Yu-jinKim
closed
4 years ago
1
Issues from code review
#13
Yu-jinKim
closed
4 years ago
0
add normalization in the expected coverage
#12
Yu-jinKim
closed
4 years ago
1
Issues from code review
#11
Yu-jinKim
closed
4 years ago
2
Update report summary text
#10
mattgarner
closed
4 years ago
7
Restored files
#9
woook
closed
4 years ago
1
Code review
#8
woook
closed
4 years ago
1
Add unique output name
#7
Yu-jinKim
closed
4 years ago
0
Add version workflow + flagstat reads numbers
#6
Yu-jinKim
closed
4 years ago
1
Unique report names
#5
mattgarner
closed
4 years ago
1
Single sample
#4
mattgarner
closed
4 years ago
0
Software versions missing from summary sheet
#3
mattgarner
closed
4 years ago
2
Reads QC missing from summary sheet
#2
mattgarner
closed
4 years ago
2
applet works
#1
Yu-jinKim
closed
4 years ago
0
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