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ebi-ait
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submissions-workstream
A repository dedicated to the submissions workstreams - All code, materials and services go here.
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Update webin-portal environment files with spreadsheet generator URL
#39
KociOrges
opened
2 hours ago
0
Docker image for ENA Spreadsheet Generator
#38
KociOrges
opened
2 hours ago
0
MorPhiC November internal release
#37
anu-shiva
opened
4 hours ago
0
md5sum script for GEO data brokering
#36
anu-shiva
opened
21 hours ago
1
Deploy ENA spreadsheet generator to Harlow K8 cluster
#35
dipayan1985
closed
2 days ago
0
Validate samples (bulk-validate) using https://wwwint.ebi.ac.uk/biosamples/schema-store/api/v2/
#34
dipayan1985
opened
3 days ago
0
Webin-REST: adapt error messages
#33
dipayan1985
closed
1 week ago
1
Submit Study 4 (JAX_RNAseq4_ExEm_brain) to production and broker to ENA
#32
dipayan1985
closed
1 week ago
3
Submit Study 2 (JAX_RNAseq2_ExtraEmbryonic) to production and broker to ENA
#31
dipayan1985
opened
1 week ago
2
Test process ENA brokering- JAX_RNAseq4_ExEm_brain
#30
anu-shiva
closed
1 week ago
4
morphic-util - align with spreadsheet v7 and generalize as much as possible
#29
dipayan1985
closed
2 weeks ago
0
metadata updates Morphic schema
#28
anu-shiva
opened
1 month ago
0
JSON schema validation move (Webin and BioSamples)
#27
dipayan1985
opened
1 month ago
1
Cleanup Studies in Submissions DB
#26
KociOrges
closed
1 month ago
0
Webin-REST: use bulk-validate to revalidate BioSamples when referenced in a Webin submission (https://www.ebi.ac.uk/panda/jira/browse/ENA-6310)
#25
dipayan1985
opened
1 month ago
0
BioSamples V2: add new bulk-validate endpoint to re-validate BioSamples when referenced in an ENA submission
#24
dipayan1985
opened
1 month ago
0
Route53 domain URL for ingest-broker
#23
KociOrges
closed
1 month ago
0
Fix 401 Error for ingest-validator and Provider API
#22
KociOrges
closed
2 weeks ago
0
BioSamples AAP auth support deprecation
#21
dipayan1985
opened
1 month ago
0
BioSamples general refactoring before AAP deprecation
#20
dipayan1985
closed
1 month ago
0
UI improvements for sample checklists
#19
sandsebi
opened
1 month ago
0
Onboard Webin-CLI support
#18
gabsie
opened
1 month ago
0
Webin submissions: add new analysis types
#17
gabsie
opened
1 month ago
0
ENA WEBIN: Isa-Json submission support
#16
gabsie
opened
1 month ago
0
BioSamples File Upload Submissions - improve UX
#15
gabsie
opened
1 month ago
0
Proposal for morphic util organisation to align with Provider API
#14
gabsie
opened
1 month ago
0
Webin services to use GCP Firebase for authentication
#13
gabsie
opened
1 month ago
0
BioSamples 5.3.5 software release
#12
gabsie
closed
1 month ago
0
Spec out how to link datasets to gene pages
#11
gabsie
opened
1 month ago
0
Manifest file with uploads - edit instructions
#10
gabsie
opened
1 month ago
0
ENA-BioSamples mirroring and sync: NCBI reported 14000 plus samples missing in ENA browser index (from BioSamples)
#9
gabsie
closed
1 month ago
0
Webin-REST: deploy dev and test outsourced JSON schema validation of samples in BioSamples
#8
gabsie
closed
1 month ago
0
Webin submissions: stop supporting AGP files for genome submissions
#7
gabsie
closed
1 month ago
0
Provider API: refactoring: remove all unnesesary code
#6
gabsie
opened
1 month ago
0
Submission guide for biosamples and data for MICROBE
#5
idazucchi
closed
1 month ago
0
Design document for submissions product
#4
idazucchi
opened
1 month ago
1
test registration and project creation morphic ui
#3
idazucchi
closed
2 weeks ago
0
Submissions solutions redesign
#2
dipayan1985
opened
3 months ago
0
BioSamples and Webin submission: adapt to use JSON schema validation instead of XML checklists
#1
dipayan1985
opened
4 months ago
0