edgraham BinSanity issues

edgraham / BinSanity

Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation

GNU General Public License v3.0

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issues

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Error with coverage file

#62 winanonanona opened 1 year ago
0
Alignment record is too long.

#61 hannah-doris opened 2 years ago
0
Binsanity doesn't produce final bins

#60 esraagithub opened 2 years ago
0
Test works but binsanity-profile fails

#59 biotemon opened 2 years ago
2
Paired-end reads stored in a single-end read library

#58 dzolier opened 3 years ago
1
Index out of range error while running Binsanity-wf

#57 Metagymomics opened 3 years ago
2
Bio.Alphabet has been removed from Biopython error in Binsanity-refine

#56 jolespin opened 3 years ago
0
[Feature Request] Binsanity-profile to accept gzipped fasta and stdin

#55 jolespin opened 3 years ago
1
The program failed to read in your coverage file

#54 Geize opened 3 years ago
7
Error during Affinity Propagation stage with Binsanity-lc

#53 michaelwoodworth opened 3 years ago
1
error with "concat"

#52 CLGLynnsane opened 4 years ago
1
Bio.Alphabet removed from Biopython

#51 alxsimon closed 3 years ago
9
utils scripts :: TabError: inconsistent use of tabs and spaces in indentation

#50 EricDeveaud closed 4 years ago
1
tag release on github accordingly to pypi

#49 EricDeveaud closed 4 years ago
1
MemoryError: Unable to allocate 192. GiB for an array with shape (160646, 160646) and data type float64

#48 mutantjoo0 opened 4 years ago
5
Fix list concatenation

#47 VarIr closed 4 years ago
1
Issue with low_completion.fna and 4mer

#46 michoug opened 4 years ago
1
Error during BinSanity execution prevent correct outputs from beign created

#45 apcamargo closed 4 years ago
3
Release source code in PyPI

#44 apcamargo closed 4 years ago
2
Binsanity-profile unable to write .cov file

#43 slambrechts closed 4 years ago
3
Binsanity-lc's TabError

#42 iquasere closed 4 years ago
1
Empty List from Binsanity-profile

#41 mbcouger closed 4 years ago
3
BinSanity docker run-error in "_continuous_distns.py"

#40 Jigyasa3 closed 4 years ago
1
Fix typo that breaks installation

#39 meren closed 4 years ago
0
Final Bins Output

#38 cazzlewazzle89 closed 4 years ago
1
Binsanity-profile truncates the name of the alignment file

#37 jolespin closed 4 years ago
1
Using BinSanity for metagenomes with bacteria, archaea, and protists

#36 jolespin closed 4 years ago
1
[Question] Why does BinSanity-profile require fasta file and contig ids?

#35 jolespin closed 4 years ago
1
Make BinSanity compatible with both Python2 and Python3

#34 ozcan closed 5 years ago
0
Is it possible to use coverages from other sources ?

#33 michoug closed 5 years ago
2
add dockerfile to BinSanity v0.2.7.1

#32 housw closed 5 years ago
0
Does Binsanity_lc continue from checkpoints?

#31 jvollme closed 4 years ago
6
Error in Binsanity-lc.cov_array() - 'list' object has no attribute 'shape'

#30 prehensilecode closed 5 years ago
4
Error in CheckM stage

#29 prehensilecode closed 5 years ago
2
No log outputted.

#28 kodragonP closed 5 years ago
1
Output dir not used in Binsanity-profile

#27 openpaul closed 5 years ago
1
Binsanity-lc: TypeError: unhashable type: 'numpy.ndarray'

#26 acaciazhao closed 5 years ago
3
Test produces no bins

#25 sturne29 closed 6 years ago
7
Thoughts on using binsanity on data sets that have been MDA'd

#24 JackieGOO closed 6 years ago
1
IndexError: list index out of range

#23 MonicaSteffi closed 6 years ago
9
Error in Testing the sample Data

#22 MonicaSteffi closed 6 years ago
0
Converted to Python3

#21 ralic closed 6 years ago
0
cov_array Error: 'list' object has no attribute 'shape'

#20 palomo11 closed 6 years ago
4
problem with profile "OSError: [Errno 2] No such file or directory"

#19 camillaln closed 6 years ago
7
tests?

#18 wwood closed 6 years ago
1
please provide release tag

#17 EricDeveaud closed 6 years ago
3
BinSanity is only at v0.2.5.10 on PyPI

#16 donovan-h-parks closed 7 years ago
1
binsanity-checkm created in current working directory

#15 donovan-h-parks closed 7 years ago
2
Segmentation fault

#14 TanyaDvorkina closed 7 years ago
6
Binsanity-wf fails

#13 donovan-h-parks closed 7 years ago
4