issues
search
enblacar
/
SCpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
https://enblacar.github.io/SCpubr-book/
GNU General Public License v3.0
150
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
REQUEST | do_RidgePlot | Extending Data Lines
#78
KKnowles222
opened
1 week ago
0
REQUEST | subgroups in dotplot
#77
TdzBAS
closed
3 weeks ago
3
label.font only works for legend but not for labels shown on umap
#76
TdzBAS
closed
4 weeks ago
4
REQUEST | do_FeaturePlot | Is it possible to have one feature plot with multiple genes?
#75
AdrianaMSA
closed
1 month ago
3
Violin Feature Plots
#74
TdzBAS
closed
1 month ago
2
REQUEST | doDimPlot | Plot NA values of grouping values in background
#73
jakob-arnold
closed
1 month ago
1
Added parameter to adjust the size of gene tags
#72
nbpeterson3
closed
1 month ago
1
Fix for do_VolcanoPlot when order_tags_by = "both"
#71
nbpeterson3
closed
1 month ago
3
Seurat v5 Support
#70
shahrozeabbas
opened
1 month ago
3
BUG | do_FeaturePlot | scale = T stopped working
#69
laleaton
closed
1 month ago
3
BUG | do_FeaturePlot | The legend titles are not displayed anymore
#68
frac2738
closed
1 month ago
7
Fix typo | do_ViolinPlot | Spelling Error
#67
maximelepetit
closed
2 months ago
1
Show Genenames in featureplot for feature vector
#66
TdzBAS
closed
3 months ago
5
How to create custom mappings from p-values to annotation for BoxPlot
#65
NicoHadas
closed
2 months ago
1
REQUEST | do_DotPlot | Reqeuest for the option "dot.min".
#64
ghost
closed
4 months ago
1
BUG | do_VolcanoPlot | add gene tags based on logFC + pvalue
#63
StefanosVoglis
closed
4 months ago
1
BUG | do_FeaturePlot | diverging.palette argument is not working
#62
venkan
closed
4 months ago
8
REQUEST | do_DotPlot | Allow duplicated features
#61
frac2738
closed
4 months ago
1
REQUEST | do_DimPlot | Create UMAP with Table
#60
shahrozeabbas
closed
4 months ago
1
ncol | do_DimPlot | ncol argument scaling combined plot differently to other plots
#59
michaelplynch
closed
2 months ago
3
Extract coordinated from do_CellularStatesPlot
#58
ccruizm
closed
2 months ago
2
do_DiffusionMapPlot returns empty plots
#57
ccruizm
closed
2 months ago
2
REQUEST | do_featureplot | shared espression of One or more genes
#56
feanaros
closed
6 months ago
1
Do_FeaturePlot | Set custom scales/limits OR copy Seurat::FeaturePlot keep.scale parameter
#55
npotemkin
closed
6 months ago
2
BUG | Do_FeaturePlot | Plotting multiple FeaturePlots with idents.highlight prints them in a line rather than a grid
#54
npotemkin
closed
6 months ago
1
BUG | do_EnrichmentHeatmap | Undefined columns selected when providing named lists with dashes on the names.
#53
AlexisFon
closed
7 months ago
2
Output of Featureplot and Dimplot are of different size
#52
TdzBAS
closed
7 months ago
1
Added a parameter add_tag_side to do_VolcanoPlot
#51
Safwat08
closed
7 months ago
2
do_AzimuthAnalysisPlot is not an exported object from 'namespace:SCpubr'
#50
MWRR
closed
8 months ago
3
do_DotPlot Sequential palette, diverging, white on extreme low end
#49
ShashTrip1
closed
8 months ago
1
do_GroupwiseDEPlot with output of FindConservedMarkers
#48
olivermccallion
closed
7 months ago
1
Where is the function do_AzimuthAnalysisPlot
#47
ehatl
closed
8 months ago
1
REQUEST | do_ViolinPlot | I want order to be added
#46
christinepich
closed
9 months ago
2
REQUEST | do_DimPlot | using "split.by" I do not want to see a "combined" plot
#45
Elo-mars
closed
9 months ago
4
SCpubr suugests rgdal, but rgdal will be archived, as announced months ago, on 16 October
#44
rsbivand
closed
11 months ago
1
[do_DimPlot] add an option to hide the "combined" view
#43
frac2738
closed
11 months ago
2
Prepare for upcoming Seurat v5 release
#42
Gesmira
closed
11 months ago
1
BUG | do_EnrichmentHeatmap | features.order not working?
#41
jcshuy
closed
11 months ago
1
How to manually edit the complexHeatmap parameters after generating the heatmap?
#40
kaizen89
closed
11 months ago
1
Replace `.GetAssayData()` with `SeuratObject::GetAssayData()`
#39
mojaveazure
closed
11 months ago
1
BUG | `.GetAssayData` | Incorrect assumptions about SeuratObject versions
#38
mojaveazure
closed
11 months ago
1
check_suggests does not print missing package names | check_suggests
#37
timwoo102
closed
1 year ago
1
BUG | do_DimPlot | Multiple legends are visualised when "Group by a variable but split by another"
#36
frac2738
closed
1 year ago
3
background of label in DimPlot
#35
laurie-tonon
closed
1 year ago
1
"Undefined columns selected" | do_FunctionalAnnotationPlot | Function doesn't run
#34
paraish
closed
1 year ago
2
BUG | FUNCTION NAME | BRIEF DESCRIPTION
#33
LeoBLMitz
closed
1 year ago
5
Marking Frequency % inside Barplot stacks
#32
athulmenon
closed
1 year ago
5
BUG | do_LigandReceptorPlot() |"arrange_interactions_by = both" implementation
#31
RMOsborn012
closed
1 year ago
1
Error using do_DimPlot when using split.by
#30
ccruizm
closed
1 year ago
2
Share SCpubr book for version 1.1.2
#29
ccruizm
closed
1 year ago
2
Next