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wf-human-variation
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segfault
#144
VICTO160
opened
4 months ago
5
Input: Tandem repeat BED file: should specify file rather than directory
#143
nikelau
closed
2 months ago
5
CNV, sex chromosome explosion
#142
VICTO160
closed
3 months ago
6
missing bedgraph
#141
VICTO160
closed
4 months ago
1
Using singularity to test the demo data
#140
heksaani
closed
4 months ago
2
docker: failed to register layer
#139
lmallin
closed
4 months ago
6
getAllChromosomesBed fails with KeyError: 'HLA-A*01'
#138
stfacc
closed
4 months ago
2
Joint phasing with methylations
#137
ythuang0522
closed
1 month ago
5
workflow failing in makeAlignmentReport: ValueError: cannot convert float NaN to integer
#136
sfcs
closed
4 months ago
6
Calculate repeat expansion of RFC1
#135
vroni
closed
4 months ago
3
wf-human-variation problems after updating Nextflow to the recent version
#134
szakallasn3
closed
5 months ago
5
Process `bam_ingress:minimap2_alignment (1)` terminated with an error exit status (137)
#133
Yoon90
opened
5 months ago
4
4.3.0 clair3 models
#132
mulderdt
closed
5 months ago
1
Error executing process > 'basecalling:wf_dorado:dorado'
#131
assetdaniyarov
closed
5 months ago
1
Enable output of mitochondrial variants
#130
phillip-richmond-alamya
closed
5 months ago
2
low coverage error and warning regarding methylation tags in v1.9.1
#129
Fazulur
closed
5 months ago
15
EPI2ME Error : Validation of pipeline parameters failed!
#128
handoko12u
closed
6 months ago
3
Process snp:pileup_variants (102) terminated with an error exit status (135) -> runtime: cannot allocate memory
#127
sklages
closed
6 months ago
5
Process `snp:pileup_variants (102)` terminated with an error exit status (135) -> runtime: cannot allocate memory
#126
sklages
closed
6 months ago
2
ERROR ~ Error executing process > 'annotate_snp_vcf (1)'
#125
hyunjokoo
closed
6 months ago
5
Process `snp:aggregate_all_variants (1)` terminated -> unsetting TMPDIR fixed it
#124
sklages
closed
6 months ago
3
Omit basecalling step, start with alignment?
#123
sklages
closed
7 months ago
1
process sv:variantCall:sortVCF generating vcf with incomplete header
#122
Fazulur
closed
6 months ago
5
Input multiple sub.BAM files for a single sample
#121
phillip-richmond-alamya
closed
1 month ago
2
No SV result for non-human samples
#120
hyunjokoo
closed
6 months ago
7
targeted gVCF file
#119
stefvanbreemen
closed
5 months ago
3
vcf file from sv workflow have no header
#118
carolinehey
closed
6 months ago
17
Error at cram_cache
#117
stfacc
closed
6 months ago
4
The --snp workflow is halted due to a mosdepth/bedtools error: "command not found"
#116
kleighwill
closed
7 months ago
2
Soft clipping for supplementary alignment: minimap2 -Y
#115
e-sollier
closed
6 months ago
4
cnv:makeReport ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()
#114
ffavero
closed
5 months ago
9
The detected CNV in the results are few.
#113
sloth-eat-pudding
closed
7 months ago
3
CNV-calling with BED-file (Adaptive sampling)
#112
fellen31
closed
7 months ago
1
Using older model get dorado error
#111
ffavero
closed
7 months ago
4
Genome build detected in BAM is not compatible
#110
stefvanbreemen
closed
8 months ago
4
genome build BAM file
#109
stefvanbreemen
closed
8 months ago
3
Nextflow mounts /home into container, shadowing container home and causing command not found errors (exit 127)
#108
mthartma
closed
7 months ago
34
Workflow error
#107
carolinehey
closed
6 months ago
2
How is SVTYPE calculated in html report?
#106
imdanique
closed
8 months ago
2
Better hg38 genome?
#105
ymcki
closed
8 months ago
1
What is the reason for the defined resource limit in the .nextflow.config?
#104
parkerpayne
closed
8 months ago
1
no str results with ENSEMBLE GRCh38 fasta file
#103
asalhab
closed
4 months ago
5
Pipeline producing BAM output instead of CRAM
#102
lfearnley
closed
8 months ago
1
Not able to run pipeline in google cloud or aws batch
#101
YussAb
closed
8 months ago
3
Not able to run pipeline in google cloud or aws batch
#100
YussAb
closed
8 months ago
1
cram file generated by snp:merge_haplotagged_contigs instead of bam
#99
leticia-castro
closed
7 months ago
4
Docker unable to find image locally (ontresearch/wf-common)
#98
fidibidi
closed
9 months ago
4
modkit
#97
carolinehey
closed
8 months ago
1
Docker unable to find container?
#96
parkerpayne
closed
8 months ago
2
False positive over-segmentation of sex chromosomes during CNV workflow
#95
Tintest
closed
6 months ago
7
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