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euba
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BacArena
agent based modelling
GNU General Public License v3.0
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Programming and BacArena
#140
maringos
closed
5 years ago
2
plotReactActivity units across plots
#139
maringos
closed
5 years ago
2
plotShadowCost all(m==0) error
#138
maringos
closed
5 years ago
2
Designing a medium
#137
utkinaira
closed
5 years ago
2
kill individuals
#136
fairquestion
closed
5 years ago
13
setkinetics question
#135
fairquestion
closed
5 years ago
4
Relative amount of substance
#134
thh32
closed
5 years ago
2
modelseed to BIGG db
#133
fairquestion
closed
5 years ago
4
Syntrophic two-species community model
#132
fairquestion
closed
5 years ago
5
Fixing wrong y-axis name in plotGrowthCurve
#131
maringos
closed
5 years ago
0
Idea for the vignette - Live Print Out
#130
maringos
opened
6 years ago
0
Testing supplementary R script to reproduce _P. aeruginose_ biofilm simulation on Linux system
#129
zhssakura
closed
5 years ago
7
Undefined error with fluxes of simulation object
#128
maringos
closed
5 years ago
5
libglpk-dev for non-debian RPM systems
#127
maringos
closed
6 years ago
4
total amount of nutrients flowing between species
#126
fairquestion
closed
6 years ago
14
AddSubs to an eval object
#125
maringos
closed
6 years ago
3
How to get plotSpecActivity() for a specific species?
#124
thh32
closed
6 years ago
3
plotShadowCost error
#123
thh32
closed
6 years ago
2
Providing bacteria specific movement speeds
#122
thh32
closed
6 years ago
3
add substances after X hours
#121
fairquestion
closed
6 years ago
3
Model doesnt match the published results, ideas?
#120
thh32
closed
6 years ago
5
mtf and minimal growth
#119
maringos
closed
6 years ago
2
cellweight_sd and different optimization result
#118
maringos
closed
6 years ago
6
Is there any updated class diagram for BacArena
#117
maringos
closed
6 years ago
0
Support for AGORA models
#116
microsud
closed
5 years ago
1
Setting equivalent to a simple sybil optimization - Idea for https://bacarena.github.io/
#115
maringos
closed
5 years ago
0
SIHUMI models of publication need upgrade
#114
maringos
closed
6 years ago
0
You passed a nil value!
#113
maringos
closed
2 years ago
12
Create LICENSE
#112
jotech
closed
6 years ago
0
Addition of organisms and substances later in the simulation and changes in the simEnv code
#111
maringos
closed
6 years ago
2
How can I enable the advection in BacArena
#110
maringos
closed
6 years ago
0
Growth-related question
#109
maringos
closed
6 years ago
2
SIHUMI tsv files (sybilSBML removed from CRAN)
#108
fairquestion
closed
6 years ago
9
No uptake for reaction
#107
fairquestion
closed
6 years ago
2
Chemotaxis for more than one compound
#106
maringos
closed
6 years ago
1
Chemotaxis
#105
maringos
closed
6 years ago
5
Examples folder
#104
maringos
closed
6 years ago
0
One Organism with Two Phenotypes
#103
maringos
closed
6 years ago
6
Interim Solution to solve issue #101
#102
maringos
closed
6 years ago
3
CPLEX Error 1217: No solution exists.
#101
maringos
closed
6 years ago
6
Agent Based Modeling and FBA
#100
maringos
closed
6 years ago
8
Version of BacArena
#99
maringos
closed
5 years ago
3
Sim should be replaced by object
#98
maringos
closed
6 years ago
1
Sim should be replaced by object
#97
maringos
closed
6 years ago
2
Adding organism after one iteration without any one fails
#96
maringos
closed
6 years ago
0
Deathrate: What does it mean?
#95
maringos
closed
6 years ago
3
Parallelization: Alternative example approaches
#94
maringos
closed
6 years ago
11
Function addOrgbyMatrix
#93
maringos
closed
7 years ago
1
Necessity: addOrgs by matrix
#92
maringos
closed
7 years ago
10
HeatMapFeeding is missing
#91
maringos
closed
7 years ago
2
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