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euba
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BacArena
agent based modelling
GNU General Public License v3.0
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rmSubs(arena, mediac) doesn't work
#190
joyvgeerestein
closed
9 months ago
5
removeM
#189
maringos
closed
10 months ago
1
Fatal error: cannot create 'R_TempDir' Error in makePSOCKcluster(names = spec, ...) : Cluster setup failed. 2 of 2 workers failed to connect. Calls: simEnv ... diffuse_par -> diffuse_par -> <Anonymous> -> makePSOCKcluster Timing stopped at: 0.004 0.082 240.4 Execution halted
#188
arijitnus
opened
1 year ago
1
Can I graph a specific metabolic pathway that produces a metabolite?
#187
Valentin-Bio
opened
1 year ago
0
Problems with code reproduction in tutorials
#186
lishijia13579
opened
1 year ago
1
modify sihumi_test community
#185
mmpust
opened
1 year ago
0
Simulations taking too long
#184
EoinV
opened
1 year ago
1
Organisms will not utilize substrates
#183
wtscott31
opened
1 year ago
3
Sybil Error: needs an object of class modelorg, Matrix or matrix!
#182
NatashaJorge
opened
1 year ago
1
More individuals than space on the grid error
#181
wtscott31
closed
1 year ago
3
Manipulate reaction equations?
#180
hannahschrenk
opened
2 years ago
1
Metabolite diffusion
#179
zhssakura
closed
2 years ago
2
Model grows without any carbon source
#178
Zhelunnn
closed
2 years ago
7
Modified models of C. beijerinckii and M. barkeri
#177
hannahschrenk
closed
2 years ago
4
Rtools for standard BacArena
#176
maringos
closed
1 year ago
7
Auxotrophic example in Introduction doc
#175
spburillo
opened
2 years ago
0
Continue simulation at time step n
#174
charlos1204
opened
2 years ago
3
Is this line of findFeeding3rep correct?
#173
maringos
opened
2 years ago
4
FVA Min-Max mix up in FluxVarSim()
#172
shraddhakhirwadkar
closed
3 years ago
1
Set tstep (the time (in h) per iteration) with different values does not change the simulation results.
#171
XuejianXiong
opened
3 years ago
0
Parallelization issue
#170
hites77
opened
3 years ago
0
Comparison of 'deathrate' and 'removeM'
#169
zhssakura
opened
3 years ago
0
Cell lysis
#168
zhssakura
opened
3 years ago
1
Parameter justification for bacarena
#167
hites77
opened
3 years ago
0
Can't add my own model readMATmod
#166
JessicaSingh1997
opened
3 years ago
6
modeling of external enzymes
#165
jotech
opened
3 years ago
3
plotReaActivity breaks in sims with many replications
#164
maringos
closed
3 years ago
1
Warnings after running some functions
#163
maringos
opened
4 years ago
0
Need for species selection in findRxnFlux
#162
maringos
opened
4 years ago
0
simEnv_par() function
#161
XuejianXiong
closed
3 years ago
14
Need of cutoff in findfeeding3rep function
#160
maringos
opened
4 years ago
0
Do entries of lobnd have names?
#159
maringos
closed
4 years ago
2
Removed from CRAN
#158
Jsakkos
closed
4 years ago
2
Set or control pH
#157
utkinaira
closed
4 years ago
3
SybilSBML fail to install
#156
aassie
closed
4 years ago
6
Installing BacArena on Windows 10
#155
mTangherlini
closed
4 years ago
5
findFeeding3 function
#154
charlos1204
opened
4 years ago
0
Install Dependencies
#153
maringos
opened
5 years ago
5
Parallelization and hidden GLPK
#152
maringos
closed
4 years ago
2
Explanation of warnings
#151
maringos
closed
4 years ago
3
Antibiotics
#150
tenguzame
opened
5 years ago
2
Seeking advice for modeling eukaryotic cells
#149
utkinaira
closed
5 years ago
3
Bug in Continue functionality
#148
maringos
opened
5 years ago
0
Duplication of organism - addOrg issue
#147
maringos
closed
5 years ago
2
Unable to import .mat model
#146
yugi1001
closed
5 years ago
7
Cross-feeding plot customization
#145
tenguzame
closed
5 years ago
2
Minor typo found
#144
maringos
closed
5 years ago
2
Correction of the switch plot of the function findFeeding3rep
#143
maringos
closed
5 years ago
0
Setting environmental concentrations in simulations
#142
ziels
closed
5 years ago
5
fluxVarSim and rnd argument
#141
maringos
closed
5 years ago
2
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