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fairtracks
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fairtracks_standard
FAIRtracks is a JSON Schema defining a minimal standard for genomic track metadata.
https://fairtracks.net
Creative Commons Attribution 4.0 International
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Limit track.file_format to 'Format' ancestor in EDAM
#77
sveinugu
opened
1 year ago
0
Switch to Human Phenotype Ontology
#76
sveinugu
opened
2 years ago
0
Bump y18n from 4.0.0 to 4.0.1
#75
dependabot[bot]
opened
3 years ago
0
Augmentation of example JSON plus misc augmentation-related improvements and cleanup
#74
sveinugu
closed
4 years ago
0
Add `sample`->`sample_type`->`details` field?
#73
sveinugu
closed
4 years ago
0
Add `sample`->`sample_type`->`cell_lineage`?
#72
sveinugu
closed
4 years ago
1
Add shortcuts to central properties to the top-level JSON schema
#71
sveinugu
opened
4 years ago
0
Automate release process for new versions of FAIRtracks
#70
sveinugu
opened
4 years ago
0
Release v1.0.2
#69
sveinugu
closed
4 years ago
0
Update github checks code to correspond with validator changes
#68
sveinugu
opened
4 years ago
0
Reopen: Improved version handling. Updated documentation and dependaencies. Releases do not need dedicated a branch anymore
#67
sveinugu
closed
4 years ago
0
Debugging checks
#66
sveinugu
closed
4 years ago
0
Improved version handling. Updated documentation and dependencies. Releases do not need dedicated a branch anymore
#65
sveinugu
closed
4 years ago
1
Misc FAIRtracks bugs/issues
#64
sveinugu
opened
4 years ago
1
Publication (PMID) to list of publications (DOI)
#63
sveinugu
opened
4 years ago
0
Enforce conditional validation of augmented data
#62
dtitov
closed
4 years ago
1
Implement CI pipeline
#61
dtitov
closed
4 years ago
2
Change from unique/foreignProperty to unique/primary_key?
#60
sveinugu
opened
4 years ago
0
Update local_id documentation: all should refer to correct investigation/hub. Add "unique within document"
#59
sveinugu
closed
4 years ago
1
Various documentation changes
#58
sveinugu
opened
4 years ago
1
Add flag for augmented metadata and related validation logic
#57
sveinugu
closed
4 years ago
4
Generate CI report after a tag is added to the repository
#56
jmfernandez
closed
4 years ago
0
Reevaluate versioning and release scheme for FAIRtracks
#55
sveinugu
closed
4 years ago
2
Consider updating documentation code and other dependencies
#54
sveinugu
closed
4 years ago
0
Validate augmented BLUEPRINT data
#53
sveinugu
opened
4 years ago
1
Release FAIRtracks v1.1 with BLUEPRINT data
#52
sveinugu
opened
4 years ago
1
Validate minimal BLUEPRINT v1.1 data
#51
sveinugu
opened
4 years ago
0
Update Track Hub Registry with BLUEPRINT v1.1 (once fully released)
#50
sveinugu
opened
4 years ago
1
Support for multiple track_collections
#49
sveinugu
opened
4 years ago
3
New model, and identifier solution for doc_info
#48
sveinugu
opened
4 years ago
1
Update BLUEPRINT data to FAIRtracks 1.1
#47
sveinugu
opened
4 years ago
0
Support data usage license information, according to FAIR principle R1.1
#46
sveinugu
opened
4 years ago
6
Publish FAIRtracks version 1.1 in v1/1.1 (but don't release)
#45
dtitov
opened
4 years ago
1
Redundant contact info?
#44
dzerbino
opened
4 years ago
2
Refine type_of_condensed_data based upon full list of BLUEPRINT data types
#43
sveinugu
opened
4 years ago
0
Reopen: Added type_of_condensed_data and geometric_track_type properties
#42
sveinugu
closed
4 years ago
0
Reopen: Added support for species, and improved genome assembly annotation
#41
sveinugu
closed
4 years ago
0
Reopen: Implemented JSON Schema versioning
#40
sveinugu
closed
4 years ago
1
Miscellaneous small fixes
#39
sveinugu
closed
4 years ago
0
Create make target to create new releases?
#38
sveinugu
closed
4 years ago
6
Added 'ontologyTermId'
#37
sveinugu
closed
4 years ago
1
Add reference between term_id and term_label pairs
#36
sveinugu
closed
4 years ago
1
Implemented ontology versioning. Changed from EFO to Uberon for organism_part and to Cell Ontology for cell_type
#35
sveinugu
closed
4 years ago
1
Implemented JSON Schema versioning
#34
sveinugu
closed
4 years ago
1
Added support for species, and improved genome assembly annotation
#33
sveinugu
closed
4 years ago
1
Extract "Contact" as a separate subschema
#32
sveinugu
closed
4 years ago
0
Added type_of_condensed_data and geometric_track_type properties.
#31
sveinugu
closed
4 years ago
0
Small documentation fixes as pull requests to https://github.com/adobe/jsonschema2md
#30
sveinugu
opened
4 years ago
0
Refactor of experiment->target
#29
sveinugu
closed
4 years ago
1
Test issue 2
#28
sveinugu
closed
4 years ago
1
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