issues
search
fhcrc
/
deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
GNU General Public License v3.0
4
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
tax_ids dropped for unnamed sequences in rdp_extract_sequences
#28
crosenth
closed
9 years ago
1
misclassification of unclassified sequences in rdp_extract_genbank
#27
crosenth
closed
9 years ago
2
Some refactoring - deenurp gb2csv merging - branch: genbank_record_hashing
#26
crosenth
closed
8 years ago
1
Remove stale branches
#25
crosenth
closed
6 years ago
0
Migrate to Travis build container-based infrastructure
#24
crosenth
closed
9 years ago
1
pubmed_ids in seq_info.csv file
#23
crosenth
closed
9 years ago
1
cache dependencies for Travis builds
#22
crosenth
closed
9 years ago
3
Gb2csv
#21
crosenth
closed
9 years ago
3
rdp_extract_genbank.py: include pubmed id in seq_info
#20
crosenth
closed
8 years ago
1
add --rejected-{seqs,info} to rdp_sequence_filter.py
#19
crosenth
closed
8 years ago
1
Need easy way to update tax_ids in seq_info file
#18
crosenth
closed
9 years ago
1
pairwise_distances fails for some sequence names
#17
tyleraland
opened
9 years ago
0
expand definition of type strain
#16
nhoffman
closed
9 years ago
1
aligner choice in filter-outliers
#15
nhoffman
opened
9 years ago
0
filtering when there's a bimodal distribution of pairwise distances
#14
nhoffman
opened
9 years ago
0
search-sequences falls back to top hit if no matches above --select-threshold
#13
crosenth
opened
10 years ago
1
Make multithreaded tasks use all cores by default
#12
cmccoy
closed
10 years ago
0
merge bump-to-002
#11
nhoffman
closed
10 years ago
0
cpu not threads
#10
crosenth
closed
10 years ago
0
Support task- and process-level parallelism
#9
cmccoy
opened
10 years ago
0
some cmalign subprocess udpates
#8
crosenth
closed
10 years ago
6
04 infernal1.1
#7
nhoffman
closed
10 years ago
3
Fastphylo to calculate distance matrices for filtering?
#6
nhoffman
opened
10 years ago
4
Assuming function name was desired here
#5
crosenth
closed
10 years ago
1
support for Infernal 1.1
#4
nhoffman
closed
10 years ago
2
filter-outliers: need option to skip pruning from taxids represented by < N sequences
#3
nhoffman
closed
11 years ago
3
add option to keep taxids represented by a single sequence
#2
nhoffman
closed
11 years ago
1
Remove R/clstutils dependency from find-outliers
#1
nhoffman
closed
11 years ago
1
Previous