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finncatling
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lap-risk
Uncertainty-aware mortality risk modelling in emergency laparotomy, using data from the NELA.
MIT License
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Parallise imputation
#64
finncatling
closed
3 years ago
1
Move lactate / albumin missingness indicator generation
#63
finncatling
closed
3 years ago
1
Save summary statistics from 08_lactate_imputation.py
#62
finncatling
closed
3 years ago
1
Save summary statistics from 07_albumin_lactate_imputation.py
#61
finncatling
closed
3 years ago
1
Save summary statistics from 06_categorical_imputation.py
#60
finncatling
closed
3 years ago
1
Save summary statistics from 05_wrangling_and_mice.py
#59
finncatling
closed
3 years ago
1
Transform lactate / albumin partial dependence plots
#58
finncatling
closed
3 years ago
1
Change lactate transformation?
#57
finncatling
closed
3 years ago
1
Change albumin transformation
#56
finncatling
closed
3 years ago
2
Do patterns of lactate / albumin missingness vary across institutions?
#55
finncatling
closed
3 years ago
1
lap-risk-28
#54
finncatling
closed
3 years ago
0
lap-risk-52
#53
finncatling
closed
3 years ago
0
Single bash script to run all python scripts
#52
finncatling
closed
3 years ago
0
lap-risk-50 updated readme
#51
finncatling
closed
3 years ago
0
Python / pipenv installation instructions
#50
finncatling
closed
3 years ago
0
lap-risk-27
#49
finncatling
closed
3 years ago
0
Include mortality as feature in lactate/albumin imputation models?
#48
finncatling
closed
3 years ago
1
lap-risk-44
#47
finncatling
closed
3 years ago
0
lap-risk-44
#46
finncatling
closed
3 years ago
0
MICE running very quickly for test folds
#45
finncatling
closed
3 years ago
1
Use same n_imputations for all imputation stages?
#44
finncatling
closed
3 years ago
3
Include target (mortality) as feature in imputation models
#43
finncatling
closed
3 years ago
1
lap-risk-26
#42
finncatling
closed
3 years ago
0
lap-risk-25
#41
finncatling
closed
3 years ago
0
lap-risk-37 Rationalised some TODOs
#40
finncatling
closed
3 years ago
0
Enhanced checking of initial NELA data
#39
finncatling
closed
3 years ago
1
Speed up `TruncatedDistribution`
#38
finncatling
closed
3 years ago
1
Rationalise TODOs
#37
finncatling
closed
3 years ago
1
lap-risk-34
#36
finncatling
closed
3 years ago
0
Change to dict for storing per-split state in SplitterTrainerPredictor?
#35
finncatling
closed
3 years ago
1
Train-test split for current model using wrong indices?
#34
finncatling
closed
3 years ago
2
lap-risk-32
#33
finncatling
closed
3 years ago
0
Sanity checking of NELA data
#32
finncatling
closed
3 years ago
0
lap-risk-23
#31
finncatling
closed
3 years ago
0
Compare mortality between current-NELA-model incomplete cases with complete cases
#30
finncatling
closed
3 years ago
4
Tests for 07_albumin_lactate_imputation.py
#29
finncatling
closed
3 years ago
0
Tests for 06_categorical_imputation
#28
finncatling
closed
3 years ago
0
Tests for 05_wrangling_and_mice.py
#27
finncatling
closed
3 years ago
0
Tests for 04_consolidate_indications
#26
finncatling
closed
3 years ago
0
Tests for 03_plot_current_model.py
#25
finncatling
closed
3 years ago
0
Tests for 02_train_eval_current_model.py
#24
finncatling
closed
3 years ago
2
Tests for 01_train_test_split.py
#23
finncatling
closed
3 years ago
0
lap-risk-21 test_determine_imputations now passes
#22
finncatling
closed
3 years ago
0
test_determine_imputations is failing
#21
finncatling
closed
3 years ago
0
lap-risk-18 Simulated initial DataFrame
#20
finncatling
closed
3 years ago
0
lap-risk-17-debug-tests
#19
finncatling
closed
3 years ago
0
Higher-fidelity dummy DataFrame
#18
finncatling
closed
3 years ago
0
Debug test fixtures
#17
finncatling
closed
3 years ago
0
Consolidate ("Perforation", "AbdominalAbscess") indication
#16
finncatling
closed
3 years ago
1
lap-risk-12 Consolidated multi-indications to peritonitis instead of perforation
#15
finncatling
closed
3 years ago
0
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