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finncatling
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lap-risk
Uncertainty-aware mortality risk modelling in emergency laparotomy, using data from the NELA.
MIT License
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Single figure for calibration curves
#114
finncatling
closed
3 years ago
0
Random-intercept current model
#113
finncatling
closed
3 years ago
0
Current model now using preprocessed data
#112
finncatling
closed
3 years ago
0
Current model using the unprocessed data
#111
finncatling
closed
3 years ago
0
Include worked example (ideally in main text)
#110
finncatling
closed
3 years ago
0
Add per-hospital random intercept
#109
finncatling
closed
3 years ago
2
Draft initial wrangling script
#108
finncatling
closed
3 years ago
0
Switch to Helvetica in figures
#107
finncatling
closed
3 years ago
1
Sensitivity analysis and better plotting
#106
finncatling
closed
3 years ago
0
Evaluate novel model full risk distributions
#105
finncatling
closed
3 years ago
6
Update manuscript with data from new NELA report
#104
finncatling
closed
3 years ago
0
Put relevant parts of initial univariate wrangling notebook into this repo
#103
finncatling
closed
3 years ago
0
Change transformed PDP y axis scale to relative risk for novel model
#102
finncatling
closed
3 years ago
1
Repo DOI
#101
JMathiszig-Lee
opened
3 years ago
1
Analyse sensitivity of lactate / albumin splines to mortality labels as imputation model features
#100
finncatling
closed
3 years ago
2
Non-target imputation sensitivity analysis
#99
finncatling
closed
3 years ago
0
Summary demographic data
#98
JMathiszig-Lee
closed
3 years ago
2
How do we display novel model output in production?
#97
JMathiszig-Lee
closed
3 years ago
1
Score comparer
#96
finncatling
closed
3 years ago
0
lap-risk-93
#95
finncatling
closed
3 years ago
0
Sensitivity analysis of model comparison to imputed indications / CT
#94
finncatling
closed
3 years ago
1
BDAU environment restarting during 08_train_eval_novel_model.py
#93
finncatling
closed
3 years ago
3
Tests for NovelModel
#92
finncatling
closed
3 years ago
0
LactateAlbuminImputer and quick_sample tests
#91
finncatling
closed
3 years ago
0
LactateAlbuminImputer._get_features_where_lacalb_missing & ._get_features_where_lacalb_observed
#90
finncatling
closed
3 years ago
1
Compare models using per-split differences in performance
#89
finncatling
closed
3 years ago
0
deterministic quick_sample where quantity == 'y'
#88
finncatling
closed
3 years ago
1
deterministic quick_sample where quantity == 'y'
#87
finncatling
closed
3 years ago
1
Basic plotting for novel model
#86
finncatling
closed
3 years ago
0
quick_sample isn't deterministic when quantity='y'
#85
finncatling
closed
3 years ago
1
Plotting script for novel model
#84
finncatling
closed
3 years ago
3
Add in CI. Add license
#83
finncatling
closed
3 years ago
0
Add in CI. Add license
#82
finncatling
closed
3 years ago
1
lap-risk-7
#81
finncatling
closed
3 years ago
1
Tests for 08_train_eval_novel_model.py
#80
finncatling
closed
3 years ago
0
Scorer should report median scores across all of fold 0
#79
finncatling
closed
3 years ago
1
Gap in novel model indication PDP histogram
#78
finncatling
closed
3 years ago
1
Create LICENSE
#77
JMathiszig-Lee
closed
3 years ago
0
Add license
#76
JMathiszig-Lee
closed
3 years ago
0
Add in CI
#75
JMathiszig-Lee
closed
3 years ago
3
Compare model performance on extreme-value patients
#74
finncatling
closed
3 years ago
5
Transform mortality model PDPs
#73
finncatling
closed
3 years ago
1
Histograms on PDP plots
#72
finncatling
closed
3 years ago
3
Reduce complexity of GAM spline terms
#71
finncatling
closed
3 years ago
1
Parallelize novel model fitting
#70
finncatling
closed
3 years ago
1
y axis labels for albumin / lactate PDP plots
#69
finncatling
closed
3 years ago
1
lap-risk-5
#68
finncatling
closed
3 years ago
0
lap-risk-10 First draft using median as point estimate of performance
#67
finncatling
closed
3 years ago
0
lap-risk-4-6-56-58-63-65
#66
finncatling
closed
3 years ago
0
Evaluation pipeline for lactate / albumin imputation models
#65
finncatling
closed
3 years ago
1
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