issues
search
flatironinstitute
/
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
640
stars
370
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
F-Dff Object Returns NoneType
#1163
CraigScullyClemmons
closed
1 year ago
2
Analysis inside a region designated by a Binary Mask
#1162
ggmirandac
opened
1 year ago
2
Pims fallback for avi loading
#1161
EricThomson
closed
1 year ago
0
Caiman cannot find example_movies folder
#1160
wkuthsc
closed
1 year ago
6
Tensorflow-base is corrupted
#1159
wkuthsc
closed
1 year ago
2
Do you need to downsample the video for calculating the correlation image, if you downsampled using ssub,tsub ??
#1158
bashsyr
opened
1 year ago
1
gSig and gSiz difference
#1157
ggmirandac
closed
10 months ago
1
Adding quilt viewer to visualize how FOV is broken up into patches
#1156
EricThomson
closed
1 year ago
1
Proposal: Implement lazy computing arrays for CNMF outputs
#1155
kushalkolar
opened
1 year ago
15
Handle autoregressive parameter p consistently
#1153
EricThomson
opened
1 year ago
0
Quality assurance method for ROI detection
#1152
zhouyi0812
closed
10 months ago
7
Issue with multiprocessing in VS code interactive window
#1151
JohnStout
closed
10 months ago
4
View components problem
#1150
ggmirandac
closed
10 months ago
3
estimates.nb_view_components [and _3d] throws error in demo notebooks
#1149
noahpettit
closed
1 year ago
2
Tracking task: CLI demos should not be lukewarm on similarities to Jupyter demos
#1148
pgunn
opened
1 year ago
0
Dev load pims fallback
#1147
EricThomson
closed
1 year ago
0
Create notebook showing how to work with NWB format
#1146
EricThomson
opened
1 year ago
5
CNMF-e how to use the same mask on different sessions
#1145
annahayoon
closed
1 year ago
2
Can I access temporal component w/o detrending & deconvolving?
#1143
mvagabov
closed
1 year ago
2
CaImAn 2023 Roadmap
#1142
EricThomson
opened
1 year ago
0
better documentation of serializing CNMF models to disk and loading them in
#1141
kushalkolar
opened
1 year ago
3
Bokeh Error by defining the notebook_extension
#1140
ggmirandac
closed
1 year ago
6
Clarify gSiz parameter role(s)
#1139
EricThomson
opened
1 year ago
5
Different result of pipeline and OnACID
#1138
chimmut
closed
1 year ago
2
Attempt to load avi throws importerror
#1137
EricThomson
closed
1 year ago
14
reconstruct the movie according to ROIs
#1136
zhouyi0812
opened
1 year ago
3
'NoneType' object is not subscriptable when running estimates.S
#1135
zhouyi0812
closed
1 year ago
11
OnACID fit_online initialization does not match with minibatch size
#1134
andyrdar
closed
1 year ago
3
Fix `subidx` to enable computing the NoRMCorre template frame from subset of movie frames
#1133
ludovicbellier
opened
1 year ago
12
Fix flickering movie when using embed_opencv mode
#1132
EricThomson
opened
1 year ago
0
Create a demo notebook for seeding CNMFE
#1131
EricThomson
opened
1 year ago
0
Issues with manually seeding CNMF-E
#1130
wmsheer
opened
1 year ago
11
updated vis tools to work with new bokeh
#1129
EricThomson
closed
1 year ago
9
Strategies for reducing size/storage - uint8?
#1128
melkalliny
closed
1 year ago
17
Our bokeh calls rely on flags removed in bokeh 3.x
#1127
pgunn
closed
1 year ago
6
Tracking task: Migrate from tensorflow to pytorch (or possibly numba)
#1126
pgunn
opened
1 year ago
8
Update README.md
#1125
EricThomson
closed
1 year ago
0
Do you guys still have access to the human-labeled ground-truth data from the paper?
#1124
loftusa
closed
1 year ago
3
Phasing out the wiki
#1123
EricThomson
opened
1 year ago
0
`extract_patch_coordinates` outputs overlapped patches when `stride` is set to 0
#1122
rob-the-bot
closed
1 year ago
6
Can I get a sanity check from you guys?
#1121
loftusa
closed
1 year ago
10
None of the backends could be imported
#1120
zyazdani-92
closed
1 year ago
13
Can't load saved results in caiman GUI
#1119
chriski777
closed
1 year ago
4
fastplotlib demos for caiman notebooks
#1118
kushalkolar
closed
1 year ago
3
`display_movie` line dies in remote jupyter kernel
#1117
loftusa
closed
10 months ago
2
Add patch visualization for motion correction and CNMF
#1116
EricThomson
closed
1 year ago
2
Package caiman not found
#1115
CatarinaPachec
closed
1 year ago
10
Parametrization setup with .TIF
#1114
andyrdar
closed
1 year ago
4
do you guys want plotting code?
#1113
loftusa
closed
10 months ago
3
`cnmf_obj.estimates.idx_components` should include all indices if no bad components were found
#1112
loftusa
closed
1 year ago
3
Previous
Next