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flo-schu
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pymob
Python model building platform
MIT License
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Test inference with different solvers
#77
flo-schu
opened
22 hours ago
0
Data variables can have their own dimensional order, but the observations can only have one dimensional order.
#76
flo-schu
opened
3 days ago
1
Implement loglikelihood and gradient checkers for numpyro
#75
flo-schu
closed
4 days ago
0
bump version 0.4.0a1 -> 0.4.0
#74
flo-schu
closed
5 days ago
0
implement more flexible control over data dimensionality
#73
flo-schu
closed
5 days ago
0
Release 0.4.0
#72
flo-schu
closed
5 days ago
0
Simplify parameterize/dispatch method
#71
flo-schu
opened
5 days ago
1
Catch jax errors and give useful error messages
#70
flo-schu
opened
6 days ago
0
Define custom distributions
#69
flo-schu
opened
1 week ago
0
Refactor free_model_parameters
#68
flo-schu
closed
1 day ago
0
Implement scripting API for bufferGUTS
#67
flo-schu
closed
5 days ago
0
Implement a minimal simulation test
#66
flo-schu
closed
5 days ago
0
Write descriptions into config file at export, in order to create self documented configuration files
#65
flo-schu
opened
1 week ago
0
Write quickstart doucmentation for scripting API
#64
flo-schu
closed
5 days ago
0
Add additional fixtures for different Simulation setup APIs
#63
flo-schu
closed
1 week ago
0
10 write tests for the api
#62
flo-schu
closed
1 week ago
0
Write documentation for scripting API
#61
flo-schu
closed
5 days ago
1
Add pre-commit checks
#60
flo-schu
opened
1 week ago
0
Improve data structure of config files
#59
flo-schu
opened
2 weeks ago
0
Add parameter anaylsis to pymob
#58
flo-schu
closed
3 weeks ago
0
Add a convenience method to traverse to the case studies directory fr…
#57
flo-schu
closed
1 month ago
0
Implement SBML I/O methods.
#56
flo-schu
opened
1 month ago
0
Implement SBI
#55
flo-schu
opened
1 month ago
0
Deploy documentation
#54
flo-schu
closed
2 months ago
0
Merge dev into main for release 0.3.0
#53
flo-schu
closed
2 months ago
0
Write github test for the minimal installation without extra dependencies.
#52
flo-schu
opened
2 months ago
0
Improve SVI convergence curve plot
#51
flo-schu
opened
3 months ago
0
Implement early stopping in numpyro SVI
#50
flo-schu
opened
3 months ago
0
Check parameters obtained from probabilistic model and fixed parameters with provided model
#48
flo-schu
opened
3 months ago
0
Implement results methods from reversible-damage project
#47
flo-schu
closed
3 weeks ago
0
Update to `numpyro 0.0.14` (lot's of new functionality).
#46
flo-schu
opened
3 months ago
0
Results storage for multiobjective results (pymoo)
#45
flo-schu
opened
3 months ago
0
Create a reset coordinates decorator, which copies the coordinates before a function and then resets them afterwards
#44
flo-schu
closed
5 days ago
1
Change parameters on log axis in interactive application
#43
flo-schu
opened
3 months ago
0
Implement plotting utility for generic predictions
#42
flo-schu
opened
3 months ago
0
Extract covariance matrix from Multivariate SVI result and use as the sampling distribution for pymc or numpyro
#41
flo-schu
opened
3 months ago
0
Create a documentation section for tools to generate generic results from the `idata` objects
#40
flo-schu
opened
3 months ago
0
Use table utility from `case_studies/reversible_damage/scripts/parameter_identifiability.py` as a posterior export tool for the inferer;
#39
flo-schu
closed
3 weeks ago
0
Generate model comparison table
#38
flo-schu
opened
3 months ago
0
Allow to pass y0 directly to the evaluator
#37
flo-schu
opened
3 months ago
0
Use the `Evaluator` class only to construct the function call or even to validate it only
#36
flo-schu
opened
3 months ago
1
avoid instantiating Evaluator all the time
#35
flo-schu
closed
3 months ago
1
Abstract indexing (dimension reduction) method from `SingleSubstanceSim.reshape_observations` into a new method
#34
flo-schu
opened
3 months ago
1
Infer prior names in prior and posterior predictions of the numpyro_backend from the model specification
#33
flo-schu
opened
3 months ago
0
match ODE states from y0 and model return statement to catch model specification errors before they occur
#32
flo-schu
opened
3 months ago
0
Allow `Evaluator.results` to handle lists of varying-sized arrays
#31
flo-schu
closed
5 days ago
0
Switch to interactive `Simulation` environment
#30
flo-schu
opened
3 months ago
2
Make imports of numpyro, jax, ... optional
#29
flo-schu
closed
2 months ago
1
Write documentation for publication
#28
flo-schu
closed
2 months ago
2
Write tests for new methods
#27
flo-schu
closed
2 months ago
1
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