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fractal-analytics-platform
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fractal-tasks-core
Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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Add 2D support for Cellpose & napari workflows task (closes #398)
#403
jluethi
closed
1 year ago
14
Remove direct torch dependency (close #355)
#402
tcompa
closed
1 year ago
3
Add Pydantic model for cellpose models?
#401
tcompa
closed
8 months ago
8
Parse attribute descriptions for custom types
#400
tcompa
closed
1 year ago
1
Make task-argument type hints compatible with JSON Schemas
#399
tcompa
closed
1 year ago
6
Support 2D-only OME-Zarrs?
#398
jluethi
closed
1 year ago
15
Switch docstring style to Google style?
#397
jluethi
closed
1 year ago
3
Specify pinned dependency versions with `==`
#396
tcompa
closed
1 year ago
0
Update docs re: new extra
#395
tcompa
closed
1 year ago
0
Support for Python 3.11 / drop llvmlite pinned version
#394
tcompa
closed
1 year ago
3
Remove `default_args` from manifest (close #387)
#393
tcompa
closed
1 year ago
1
Python 3.11 support / llvmlite version
#392
tcompa
closed
1 year ago
3
Split tests into core/tasks
#391
tcompa
closed
1 year ago
4
Re-factor package structure and add `tasks` dependency extra
#390
tcompa
closed
1 year ago
3
Remove default_args from manifest, and update corresponding function …
#389
tcompa
closed
1 year ago
1
Review task-argument defaults
#388
tcompa
closed
1 year ago
0
Move `default_args` from manifest to function signatures
#387
tcompa
closed
1 year ago
1
Add Pydantic model for `Channel`s
#386
tcompa
closed
1 year ago
24
Review task-argument descriptions
#385
tcompa
closed
1 year ago
1
New `dev` subpackage + remove `tools` extra + parsing args descriptions from docstrings
#384
tcompa
closed
1 year ago
1
Parse parameter descriptions from docstrings
#383
tcompa
closed
1 year ago
1
New place for default meta arguments?
#381
jluethi
closed
4 months ago
4
Drop `tool` extra
#380
tcompa
closed
1 year ago
7
Include dev-tools in package
#379
tcompa
closed
1 year ago
1
Move tasks dependencies to `fractal-tasks` extra
#378
jluethi
closed
1 year ago
6
Drop `TaskArguments` models, in favor of `validate_arguments`
#377
tcompa
closed
1 year ago
5
Fix wrong field in TaskArguments
#376
tcompa
closed
1 year ago
1
JSON Schema version and pydantic v2
#375
tcompa
closed
1 year ago
7
Remove sqlmodel dev dependency
#374
tcompa
closed
1 year ago
1
Remove sqlmodel dependency (context: testing pydantic v2 for args schema generation)
#373
tcompa
closed
1 year ago
0
Missing `wavelength_id_c2` argument in `cellpose_segmentation.TaskArguments`
#372
tcompa
closed
1 year ago
1
Should we make illumination correction task more memory efficient in 3D?
#371
jluethi
opened
1 year ago
0
Remove legacy executor definitions from manifest (close #361)
#370
tcompa
closed
1 year ago
1
Use Pydantic `validate_arguments`, and add first version of JSON Schemas
#369
tcompa
closed
1 year ago
1
Test match between function arguments and pydantic model
#368
tcompa
closed
1 year ago
2
Update scikit-image
#367
tcompa
closed
1 year ago
1
Can we drop scikit-image<0.20.0 requirement?
#366
jluethi
closed
1 year ago
9
Fix multiplexing expected channel parsing & support for empty ROI table output for cellpose
#365
jluethi
closed
1 year ago
12
Optimize IO & file metadata operations in Yokogawa to Zarr
#364
jluethi
opened
1 year ago
0
Increase memory requirements for create-ome-zarr tasks (close #362)
#363
tcompa
closed
1 year ago
1
Memory usage for pandas.read_xml
#362
tcompa
closed
1 year ago
2
Drop "executor" from manifest
#361
tcompa
closed
1 year ago
0
Add memory/cpu requirements to manifest (ref #358)
#360
tcompa
closed
1 year ago
1
Add return object to napari-workflows task (close #357)
#359
tcompa
closed
1 year ago
1
Update manifest with new SLURM requirements
#358
tcompa
closed
1 year ago
4
Why does napari_workflows_task not return a metadata update?
#357
jluethi
closed
1 year ago
1
Support processing within masked ROIs for napari workflows
#356
jluethi
opened
1 year ago
0
Make torch dependency more flexible
#355
jluethi
closed
1 year ago
16
Cellpose task fails when `output_ROI_table` != None, but no objects were found
#354
jluethi
closed
1 year ago
2
Export arguments JSON schemas somewhere
#353
tcompa
closed
1 year ago
6
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