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ga4gh
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vrs
Extensible specification for representing and uniquely identifying biological sequence variation
https://vrs.ga4gh.org
Apache License 2.0
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Addresses epic #480 task "Update SequenceLocation"
#483
ahwagner
closed
7 months ago
0
Addresses epic #480 task "Reorganize Index"
#482
ahwagner
closed
7 months ago
0
Revise Haplotype model and add DerivativeMolecule
#481
ahwagner
closed
2 months ago
2
VRS 2.0 Documentation Update
#480
ahwagner
closed
2 months ago
1
Should SequenceReference be a Ga4ghIdentifiableObject?
#479
Mrinal-Thomas-Epic
closed
3 months ago
11
docs: fix ga4gh name
#475
korikuzma
closed
8 months ago
0
Create schema-level constraint for start/stop on SequenceLocation within Adjacencies
#474
Mrinal-Thomas-Epic
closed
3 weeks ago
3
Question about Adjacencies & Inversion
#469
greg-sharpe
closed
8 months ago
6
Clarification on reference allele normalization policy
#468
Mrinal-Thomas-Epic
closed
8 months ago
1
Update schema build process
#467
ahwagner
closed
8 months ago
0
RLE Schema and Normalization Algorithm
#466
ahwagner
closed
8 months ago
0
VRS digest serialization and SequenceReference
#464
ahwagner
closed
9 months ago
0
Add SV Genotype Example
#463
Mrinal-Thomas-Epic
opened
9 months ago
2
update Sphinx
#462
ahwagner
closed
9 months ago
0
Consider change to hashing algorithm for digest
#460
tnavatar
closed
9 months ago
9
Bump jinja2 from 3.1.2 to 3.1.3 in /docs/source
#459
dependabot[bot]
closed
9 months ago
0
Validation errors with ga4gh.vrs==2.0.0a2
#458
bwalsh
closed
9 months ago
1
Resolve #456 change sequenceTerminals to adjoinedSequences in Adjacency
#457
larrybabb
closed
10 months ago
3
Rename `sequenceTerminals` to `adjoinedSequences` in the new Adjacency class in 2.0
#456
larrybabb
closed
10 months ago
6
add mm process and reorg data types
#455
larrybabb
closed
11 months ago
0
Fixed copy number text and json difference issue by changing json (issue #437)
#454
sivangbagri
closed
11 months ago
3
Policy on using Adjacencies or Allele representations
#453
ahwagner
closed
8 months ago
3
Begin 2.0-alpha RTD reorg
#452
larrybabb
closed
11 months ago
0
add RLE examples with SPDI annotations
#451
ahwagner
closed
11 months ago
0
RTD build failing - requires config update
#450
larrybabb
closed
11 months ago
0
2.0 alpha SV issues/clarifications
#449
d-cameron
closed
2 months ago
2
Align SV model to VRS 2.0a
#448
ahwagner
closed
12 months ago
0
Add SV support
#447
ahwagner
closed
11 months ago
1
fixing typos
#446
Jeltje
closed
1 year ago
0
Admixture values in CopyNumberCount and other forms of variation
#445
Mrinal-Thomas-Epic
closed
7 months ago
3
update models from 2.0-alpha changes
#444
korikuzma
closed
1 year ago
5
Fix SequenceLocation ga4ghDigest.keys
#443
korikuzma
closed
1 year ago
1
fix: update digest + refgetAccession patterns
#442
korikuzma
closed
11 months ago
0
feat!: SequenceLocation.sequence --> SequenceLocation.sequenceReference
#441
korikuzma
closed
1 year ago
0
`sequence` in Sequence Location and LSE/RLE is confusing
#440
korikuzma
closed
1 year ago
6
fix: use camel case for copy change
#439
korikuzma
closed
1 year ago
0
2.0 alpha model changes to validation/models.yaml
#438
toneillbroad
closed
1 year ago
0
Copy Number Count text and json example do not match
#437
korikuzma
closed
9 months ago
3
Need "start" position in RLE
#436
larrybabb
closed
11 months ago
1
update to correct keys
#435
ahwagner
closed
1 year ago
1
test commit to demo
#434
DanielPuthawala
closed
1 year ago
1
What is Location class used for?
#433
Mrinal-Thomas-Epic
closed
11 months ago
2
Use camel case for field names
#432
korikuzma
closed
1 year ago
0
Sequence characteristic metadata
#431
ahwagner
closed
7 months ago
4
Make RLE subsequence length required
#430
ahwagner
closed
1 year ago
0
SV VRS Wave 1: Ambiguity due to intrinsic sequence-based homology
#429
Mrinal-Thomas-Epic
closed
2 months ago
2
Initial SV-VRS schema update
#428
d-cameron
closed
11 months ago
6
Ambiguous interpretation of variants when combining multiple reference sequence versions
#427
d-cameron
closed
11 months ago
2
ReferenceLengthExpression: Documentation
#426
larrybabb
closed
3 months ago
5
SV-VRS wave 1 discussion: minimal representation
#425
d-cameron
closed
2 months ago
2
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