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gagneurlab
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FRASER
FRASER - Find RAre Splicing Events in RNA-seq
MIT License
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remove pkgType from install
#34
c-mertes
closed
2 years ago
0
New gha
#33
c-mertes
closed
2 years ago
0
crash if run on large number of samples
#80
dkhalenkw
opened
2 years ago
0
filter out reads with MAPQ=0 & duplicated reads
#32
yangyangzijiajia
opened
2 years ago
0
Remove group and condition from the code/vignette as it is not used within FRASER
#31
c-mertes
opened
2 years ago
0
Additional results annotation (splice type, frameshift, utr, blacklist region)
#30
ischeller
closed
3 months ago
0
FRASER maxing out memory on sge cluster
#29
Jessen-Erik
opened
2 years ago
3
bugfix: correct quantile value for filtering & cleanup of plotEncDim
#28
ischeller
closed
2 years ago
1
Paired-end BAM files recognized as single end
#27
gaynora7
closed
2 years ago
0
In countNonSplicedReads stucked for no error report
#82
tlz4320
closed
3 years ago
1
Ppadjust is always 1
#26
gremame
closed
2 years ago
5
Question about using the mergeCounts function
#25
lyj95618
opened
3 years ago
0
Fixes for drop
#24
c-mertes
closed
3 years ago
0
Merge external counts
#23
c-mertes
closed
3 years ago
0
Use GitHub actions as CI
#22
c-mertes
closed
3 years ago
0
Question regarding the sample size of FRASER
#21
lyj95618
closed
3 years ago
2
Error in creating dir
#20
H-Qiya
closed
3 years ago
3
Error in `[[<-`(`*tmp*`, name, value = "Donor")
#19
deb0612
closed
2 years ago
4
add user specified txdb option and fix seqlevelstyle check
#18
c-mertes
closed
3 years ago
0
Switch to theta
#17
c-mertes
closed
3 years ago
0
loadFraserDataset failing if RNASeq data counts generated and loaded on different workstations
#16
h-joshi
closed
3 years ago
4
Use s3 methods
#15
c-mertes
closed
3 years ago
1
Use BiocCheck within R
#14
c-mertes
closed
3 years ago
0
Revision
#13
c-mertes
closed
3 years ago
0
Questions about optimal q and implementation="AE" vs. "PCA"
#12
bw2
opened
4 years ago
4
loadFraserDataSet directory ignored
#11
bw2
closed
4 years ago
5
Running FRASER for 4 bam files
#10
jjyotikataria
closed
3 years ago
4
Understanding the concept behind the metrics used for FRASER calculations
#9
jjyotikataria
opened
4 years ago
6
FRASER bam files for samples
#8
jjyotikataria
closed
3 years ago
5
fix appveyor
#7
c-mertes
closed
4 years ago
0
Rename FraseR to FRASER
#6
c-mertes
closed
4 years ago
0
Minor issue on line 03
#5
kant
closed
4 years ago
1
improve zscores
#85
Hoeze
closed
4 years ago
0
Unable to build vignette
#86
h-joshi
closed
4 years ago
3
Fixing path for nonSplicedCounts
#4
Lu96
closed
4 years ago
0
Safety checks for sub function of countRNADaata
#3
Lu96
opened
4 years ago
0
Bugfixes for DROP
#2
mumichae
closed
4 years ago
0
merge with upstream
#1
c-mertes
closed
4 years ago
1
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