gagneurlab MMSplice_MTSplice issues

gagneurlab / MMSplice_MTSplice

Tissue-specific variant effect predictions on splicing

MIT License

40 stars 21 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

BUG: Colab notebook is broken

#71 KuechlerO opened 7 months ago
0
BUG: VCF requirements not clearly stated & wrong seqnames derived

#70 KuechlerO opened 7 months ago
1
kipoiseq problem

#69 Eyulaochen opened 9 months ago
0
TSplice architecture

#68 dbogdano opened 11 months ago
0
Version 2.4

#67 MuhammedHasan closed 1 year ago
0
pypi_kipoiseq08

#66 MuhammedHasan closed 1 year ago
0
intermediate kipoiseq version

#65 WagnerNils opened 1 year ago
0
'chr' annotation in fasta and vcf can differ

#64 WagnerNils opened 1 year ago
0
How to interpret tissue specific results

#63 AndreaG5 opened 1 year ago
1
Bump wheel from 0.30.0 to 0.38.1

#62 dependabot[bot] opened 1 year ago
1
ValueError: numpy.ndarray size changed, may indicate binary incompatibility.

#61 zyh4482 opened 2 years ago
0
running predictions with tensorflow is slow

#60 dagap opened 2 years ago
0
dependency_updates_sklearn_dropped v2.3

#59 MuhammedHasan closed 2 years ago
1
fix predict_save to parquet

#58 WagnerNils closed 3 years ago
0
Bump pip from 9.0.1 to 21.1

#57 dependabot[bot] opened 3 years ago
0
model predictions in google collab

#56 pablo-baeza closed 3 years ago
1
added batch writer to parquet

#55 WagnerNils closed 3 years ago
0
Package dependencies don't overlap & trouble with google collab script

#54 bomansonja closed 2 years ago
3
"stop iteration" trouble

#53 rominageysels opened 3 years ago
2
Conda package for MMsplice

#52 bioinfo-K1 opened 3 years ago
1
Identifying the predicted types of splicing events

#51 bioinfo-K1 opened 3 years ago
2
Region support

#50 MuhammedHasan closed 3 years ago
0
Bump pip from 9.0.1 to 19.2

#49 dependabot[bot] closed 3 years ago
1
Interpretation of Results

#48 astarr97 closed 3 years ago
2
Used in non-model species?

#47 guandailu closed 3 years ago
1
Error with running MMSplice - keras decode('utf-8')

#46 pj-sullivan closed 2 years ago
4
Replace sklearn models with numpy implementation

#45 s6juncheng closed 2 years ago
0
memory efficient use of pyranges

#44 s6juncheng closed 4 years ago
0
MemoryError

#43 ghost closed 4 years ago
17
Controlling the number of threads

#42 tstohn closed 4 years ago
2
Problem combining MMSplice module with custom annotation in VEP

#41 helenapersson closed 2 years ago
4
error running example data - Input sequence acceptor intron length cannot be longer than the input sequence

#40 rhalperin closed 2 years ago
3
Juntion dataloader bug

#39 MuhammedHasan closed 4 years ago
0
Mtsplice

#38 MuhammedHasan closed 4 years ago
0
Adding vcf/gtf chromosome name check

#37 nickhsmith closed 4 years ago
3
Error installing MMSplice

#36 dglemos closed 4 years ago
3
fix in metadata for kipoi

#35 MuhammedHasan closed 4 years ago
0
bug fix caused by kipoiseq release

#34 MuhammedHasan closed 5 years ago
0
Breaks with latest versions of kipoiseq

#33 aerval closed 5 years ago
1
writeVCF not implemented. I wrote some implementation

#32 beskns closed 4 years ago
6
Please set keras<=2.2.5 in requirements. Not work with keras=2.3

#31 beskns closed 4 years ago
1
Can MMSplice be used for mouse or other non-human organisms?

#30 xinghua1001 closed 5 years ago
1
Variants without predictions

#29 dmb107 closed 4 years ago
1
FAILED to annotate in VEP

#28 loganylchen closed 5 years ago
3
Add performance test

#27 s6juncheng closed 2 years ago
1
Error when split_seq=False in dataloader

#26 s6juncheng closed 2 years ago
0
Exon dataloader

#25 MuhammedHasan closed 5 years ago
1
Exon module mask

#24 s6juncheng closed 5 years ago
0
MTSplice

#23 MuhammedHasan closed 5 years ago
0
MMSplice output has only 5 columns

#22 Nairobi-2020 closed 5 years ago
0