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gagneurlab
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MMSplice_MTSplice
Tissue-specific variant effect predictions on splicing
MIT License
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22
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BUG: Colab notebook is broken
#71
KuechlerO
opened
2 months ago
0
BUG: VCF requirements not clearly stated & wrong seqnames derived
#70
KuechlerO
opened
2 months ago
1
kipoiseq problem
#69
Eyulaochen
opened
4 months ago
0
TSplice architecture
#68
dbogdano
opened
6 months ago
0
Version 2.4
#67
MuhammedHasan
closed
1 year ago
0
pypi_kipoiseq08
#66
MuhammedHasan
closed
1 year ago
0
intermediate kipoiseq version
#65
WagnerNils
opened
1 year ago
0
'chr' annotation in fasta and vcf can differ
#64
WagnerNils
opened
1 year ago
0
How to interpret tissue specific results
#63
AndreaG5
opened
1 year ago
1
Bump wheel from 0.30.0 to 0.38.1
#62
dependabot[bot]
opened
1 year ago
1
ValueError: numpy.ndarray size changed, may indicate binary incompatibility.
#61
zyh4482
opened
2 years ago
0
running predictions with tensorflow is slow
#60
dagap
opened
2 years ago
0
dependency_updates_sklearn_dropped v2.3
#59
MuhammedHasan
closed
2 years ago
1
fix predict_save to parquet
#58
WagnerNils
closed
2 years ago
0
Bump pip from 9.0.1 to 21.1
#57
dependabot[bot]
opened
2 years ago
0
model predictions in google collab
#56
pablo-baeza
closed
2 years ago
1
added batch writer to parquet
#55
WagnerNils
closed
2 years ago
0
Package dependencies don't overlap & trouble with google collab script
#54
bomansonja
closed
2 years ago
3
"stop iteration" trouble
#53
rominageysels
opened
2 years ago
2
Conda package for MMsplice
#52
bioinfo-K1
opened
2 years ago
1
Identifying the predicted types of splicing events
#51
bioinfo-K1
opened
2 years ago
2
Region support
#50
MuhammedHasan
closed
3 years ago
0
Bump pip from 9.0.1 to 19.2
#49
dependabot[bot]
closed
2 years ago
1
Interpretation of Results
#48
astarr97
closed
3 years ago
2
Used in non-model species?
#47
FarmOmics
closed
3 years ago
1
Error with running MMSplice - keras decode('utf-8')
#46
pj-sullivan
closed
2 years ago
4
Replace sklearn models with numpy implementation
#45
s6juncheng
closed
2 years ago
0
memory efficient use of pyranges
#44
s6juncheng
closed
3 years ago
0
MemoryError
#43
ghost
closed
3 years ago
17
Controlling the number of threads
#42
tstohn
closed
3 years ago
2
Problem combining MMSplice module with custom annotation in VEP
#41
helenapersson
closed
2 years ago
4
error running example data - Input sequence acceptor intron length cannot be longer than the input sequence
#40
rhalperin
closed
2 years ago
3
Juntion dataloader bug
#39
MuhammedHasan
closed
4 years ago
0
Mtsplice
#38
MuhammedHasan
closed
4 years ago
0
Adding vcf/gtf chromosome name check
#37
nickhsmith
closed
3 years ago
3
Error installing MMSplice
#36
dglemos
closed
4 years ago
3
fix in metadata for kipoi
#35
MuhammedHasan
closed
4 years ago
0
bug fix caused by kipoiseq release
#34
MuhammedHasan
closed
4 years ago
0
Breaks with latest versions of kipoiseq
#33
aerval
closed
4 years ago
1
writeVCF not implemented. I wrote some implementation
#32
beskns
closed
3 years ago
6
Please set keras<=2.2.5 in requirements. Not work with keras=2.3
#31
beskns
closed
3 years ago
1
Can MMSplice be used for mouse or other non-human organisms?
#30
xinghua1001
closed
4 years ago
1
Variants without predictions
#29
dmb107
closed
3 years ago
1
FAILED to annotate in VEP
#28
loganylchen
closed
4 years ago
3
Add performance test
#27
s6juncheng
closed
2 years ago
1
Error when split_seq=False in dataloader
#26
s6juncheng
closed
2 years ago
0
Exon dataloader
#25
MuhammedHasan
closed
4 years ago
1
Exon module mask
#24
s6juncheng
closed
4 years ago
0
MTSplice
#23
MuhammedHasan
closed
4 years ago
0
MMSplice output has only 5 columns
#22
Nairobi-2020
closed
4 years ago
0
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