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galaxyproject
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ephemeris
Library for managing Galaxy plugins - tools, index data, and workflows.
https://ephemeris.readthedocs.org/
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create a frozen TTS repo for testing updates and such
#66
bgruening
opened
6 years ago
0
shed-install verbose
#65
selten
closed
6 years ago
3
Rename shed-install to shed-tools install and add --latest and --revisions flag. Add shed-tools update subcommand.
#64
rhpvorderman
closed
6 years ago
8
Shed-install should be able to update all the tools in a galaxy instance
#63
rhpvorderman
closed
6 years ago
2
possibility to install tools by version
#62
bernt-matthias
opened
6 years ago
8
0.7.1 Release
#61
rhpvorderman
closed
6 years ago
2
more example files for run-data-managers
#60
rhpvorderman
closed
6 years ago
1
Testing on travis not reliable
#59
rhpvorderman
closed
6 years ago
0
Add test that demonstrates that tools can be updated
#58
mvdbeek
closed
6 years ago
1
Fix unbounded variable
#57
mvdbeek
closed
6 years ago
0
loading of API key from yaml tool file does not work
#56
martenson
closed
6 years ago
0
Parallelization of run-data-managers. Add galaxy-wait to tests. Fix galaxy-wait issue with nginx.
#55
rhpvorderman
closed
6 years ago
12
Run-data-managers only runs one job at a time.
#54
rhpvorderman
closed
6 years ago
0
Advanced yaml templating and checking of already installed genomes.
#53
rhpvorderman
closed
6 years ago
30
Allow advanced jinja templating
#52
rhpvorderman
closed
6 years ago
2
Run-data-managers now checks whether an entry in the yaml is already installed.
#51
rhpvorderman
closed
6 years ago
3
Data manager does not check if index is already populated.
#50
rhpvorderman
closed
6 years ago
1
Use https by default
#49
bgruening
closed
6 years ago
9
Latest documentation not updated on readthedocs.
#48
rhpvorderman
closed
6 years ago
3
Completed tool documentation
#47
rhpvorderman
closed
7 years ago
3
Add documentation for shed install and run-data-managers
#46
rhpvorderman
closed
7 years ago
7
Documentation of sleep command
#45
hexylena
closed
7 years ago
2
Setup Sphinx docs so this can be published to RTD.
#44
jmchilton
closed
7 years ago
3
Fixed empty items list issue
#43
rhpvorderman
closed
7 years ago
2
fix error in run_data_managers
#42
rhpvorderman
closed
7 years ago
1
Enable api key on run_data_managers
#41
rhpvorderman
closed
7 years ago
2
New check_galaxy_config command to help upgrade a galaxy instance config
#40
julozi
opened
7 years ago
9
Issue with tool installation (BWA 546ada4a9f43)
#39
drosofff
closed
7 years ago
1
install_resolver_dependencies keys are printed in the tool_list.yml
#38
drosofff
closed
7 years ago
5
Add sleep script
#37
hexylena
closed
7 years ago
2
Add initial test against the Galaxy Docker image
#36
bgruening
closed
7 years ago
2
Adding more options to setup_data_libraries
#35
bgruening
closed
7 years ago
0
workflow-to-tools
#34
bgruening
closed
7 years ago
0
Setup data libraries
#33
bgruening
closed
7 years ago
2
Clean up the main() function
#32
bgruening
closed
7 years ago
4
Improve Release Process
#31
jmchilton
closed
6 years ago
2
Run data managers
#30
bgruening
closed
7 years ago
10
new data-manager manager script
#29
bgruening
closed
7 years ago
1
add more docu
#28
bgruening
closed
7 years ago
2
Support directories full of workflows
#27
bgruening
closed
7 years ago
4
enable global options in a tool yaml file
#26
bgruening
closed
7 years ago
10
Install tools into multiple sections
#25
bgruening
opened
7 years ago
0
Documentation is not visible
#24
CicoZhang
closed
6 years ago
1
Mention mimum required galaxy versions
#23
mvdbeek
closed
7 years ago
1
Requires Galaxy >16.04
#22
scholtalbers
closed
7 years ago
1
Add the data library script as ENTRY_POINTS in setup.py
#21
bgruening
closed
7 years ago
1
Add a script to populate data libraries
#20
bgruening
closed
7 years ago
4
Release 0.3.1?
#19
afgane
closed
7 years ago
2
Be more generic in determining a server time-out
#18
afgane
closed
7 years ago
0
Get tool list entrypoint and improvements
#17
mvdbeek
closed
7 years ago
1
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