galaxyproject pulsar issues

galaxyproject / pulsar

Distributed job execution application built for Galaxy

https://pulsar.readthedocs.io

Apache License 2.0

37 stars 49 forks source link

issues

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WIP: pulsar file collector

#370 mvdbeek opened 1 week ago
0
Ensure that _external_ids keys are strings

#369 mvdbeek opened 2 weeks ago
0
Don't immediately resume ``_monitor_active_jobs`` on exception

#368 mvdbeek closed 2 weeks ago
0
Close (almost) all file handles

#367 mvdbeek opened 2 weeks ago
0
Always close pycurl instance

#366 mvdbeek opened 3 weeks ago
0
Do not attempt to complete pre- or post-process if jobs are cancelled in the middle of either stage

#365 natefoo closed 2 months ago
2
Outputs of deleted jobs are repeatedly uploaded to Galaxy until giving up when using `remote_transfer_tus`

#364 natefoo closed 2 months ago
1
Resume support for remote_transfer_tus

#363 natefoo opened 2 months ago
2
curl remote transfers have no timeout

#362 natefoo opened 2 months ago
0
Send accept-encoding: identity to get correct content-length on head …

#361 mvdbeek closed 2 months ago
1
Update job_managers.rst

#360 peterg1t closed 2 months ago
1
Exception: Must specify user submit parameter with this manager.

#359 peterg1t opened 2 months ago
0
Node failure job with no `return_code` file still marked as successful in Galaxy

#358 natefoo opened 2 months ago
0
Support configuring the AMQP heartbeat interval, or disabling heartbeats

#357 natefoo opened 3 months ago
0
Restart kills preprocessing jobs

#356 cat-bro opened 3 months ago
1
Deleted jobs do not get cleaned up from `${manager}-preprocessing-jobs`

#355 natefoo opened 3 months ago
1
Losing jobs on restart while postprocessing

#354 natefoo opened 3 months ago
0
Do not retry on 403 error

#353 natefoo closed 2 months ago
0
TEMP/TMPDIR and co are not set to the JWD by default

#352 bgruening closed 5 months ago
1
Implement tus uploads in Pulsar client.

#351 jmchilton closed 5 months ago
0
Sync job file template with galaxy

#350 mvdbeek closed 6 months ago
0
Queue/limits for pre- and post-processing

#349 natefoo opened 7 months ago
0
Skip download of files that are already completely transferred

#348 mvdbeek closed 7 months ago
2
Use unicodify to deal with potential binary contents

#347 mvdbeek closed 7 months ago
0
Can't handle binary data in output streams

#346 natefoo closed 7 months ago
0
[WIP] Feature: Send stdout and stderr to Galaxy while job is running

#345 gecage952 opened 7 months ago
0
MQ unacknowledged retries are not very multiprocess-intelligent

#344 natefoo opened 7 months ago
0
Postprocessing POST returns 403 with nothing logged other than the request

#342 natefoo opened 7 months ago
0
Tool files are copied without execute bit

#341 natefoo opened 8 months ago
0
Restarting Pulsar is not safe

#340 natefoo closed 6 months ago
4
Fail jobs when output files exist but stage out fails

#339 natefoo opened 9 months ago
0
Add catchall OSError to recoverable exceptions

#338 mvdbeek closed 9 months ago
1
Add explicit TimeoutError catching

#337 mvdbeek closed 10 months ago
0
Update to the readthedocs configuration is needed

#336 bgruening closed 10 months ago
5
Support Container Scheduling with Azure Batch

#335 jmchilton opened 11 months ago
0
Update galaxy-job-metrics requirement

#334 cat-bro closed 10 months ago
0
Drop nose

#333 neoformit opened 11 months ago
0
Add .readthedocs.yaml

#332 natefoo closed 11 months ago
3
Also try recovering from ConnectionResetError

#331 mvdbeek closed 11 months ago
2
Support rewriting the image name

#330 natefoo opened 11 months ago
2
Transfer retries fix

#329 neoformit opened 11 months ago
7
Consumer quitting in problematic fashion

#328 astalosj closed 11 months ago
11
Jobs take a long time to complete if all expected files are not created

#327 martinwolst opened 1 year ago
0
problem on communication between galaxy,rabbitmq and pulsar

#326 potant closed 4 months ago
0
Catch drain timeout without verbose log message

#325 mvdbeek closed 1 year ago
0
Allow recovery from rabbitmq restart

#324 mvdbeek closed 1 year ago
0
Add publish timeout option to kombu

#323 mvdbeek closed 1 year ago
1
Add support for logging to sentry

#322 mvdbeek closed 1 year ago
0
User auth plugins

#321 SergeyYakubov closed 1 year ago
3
token endpoint

#320 SergeyYakubov closed 1 year ago
1