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galaxyproject
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pulsar
Distributed job execution application built for Galaxy
https://pulsar.readthedocs.io
Apache License 2.0
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problem on communication between galaxy,rabbitmq and pulsar
#326
potant
closed
8 months ago
0
Catch drain timeout without verbose log message
#325
mvdbeek
closed
1 year ago
0
Allow recovery from rabbitmq restart
#324
mvdbeek
closed
1 year ago
0
Add publish timeout option to kombu
#323
mvdbeek
closed
1 year ago
1
Add support for logging to sentry
#322
mvdbeek
closed
1 year ago
0
User auth plugins
#321
SergeyYakubov
closed
1 year ago
3
token endpoint
#320
SergeyYakubov
closed
1 year ago
1
Ci fixes
#319
mvdbeek
closed
1 year ago
0
Implement job and tool stdio separation
#318
mvdbeek
closed
1 year ago
4
Files are not copied to Galaxy (sometimes)
#317
mira-miracoli
closed
1 year ago
38
Restarting MQ breaks Pulsar publishing
#316
natefoo
closed
1 year ago
23
Allow overriding amqp prefix that doesn't match the manager name.
#315
jmchilton
closed
1 year ago
3
If `manager` is specified in the app conf and --manager is supplied, make the single manager have the supplied name
#314
natefoo
closed
1 year ago
3
Coexecution jobs don't work with non-default managers
#313
natefoo
closed
1 year ago
7
Test and mypy fixes. Add support for Python 3.11
#312
nsoranzo
closed
1 year ago
9
Minimum versions of galaxy-* packages in requirements.txt need to be higher
#311
cat-bro
closed
1 year ago
0
Load JobFilesApp from new external dependency.
#310
jmchilton
closed
1 year ago
0
Re-apply fix from #278
#309
jmchilton
closed
1 year ago
3
[WIP] Restrict tests to get some output.
#308
jmchilton
closed
1 year ago
2
Fix https://github.com/galaxyproject/pulsar/pull/299.
#307
jmchilton
closed
2 years ago
0
Update Kubernetes container for latest releases.
#306
jmchilton
closed
2 years ago
0
Fixup pulsar lib 0.14.14
#305
jmchilton
closed
2 years ago
0
Revert kube changes
#304
jmchilton
closed
2 years ago
0
Bring in updated Galaxy runner util code.
#303
jmchilton
closed
2 years ago
2
Refactor base co-execution client out of Kubernetes specific stuff.
#302
jmchilton
closed
2 years ago
1
Fix recovering "lost" jobs where the job directory does not exist at startup/recovery time
#301
natefoo
closed
2 years ago
2
Job recovery failure causes Pulsar start failure if launch_config file does not exist
#300
natefoo
closed
2 years ago
0
Use urlencode to encode path
#299
mvdbeek
closed
2 years ago
0
Skip postprocessing POST retries when the file does not exist on the pulsar machine
#298
cat-bro
opened
2 years ago
5
Cluster memory statement changes from Galaxy
#297
natefoo
closed
2 years ago
3
Incorrect `html.files_path` with docker/pulsar job
#296
neoformit
closed
1 year ago
1
Don't pass all environment variables to jobs launched by `Manager`
#295
nsoranzo
closed
2 years ago
0
Drop legacy job conf for Galaxy framework tests, test against metadata_strategy: extended
#294
mvdbeek
closed
2 years ago
0
Remote staging does not respect paths
#293
gmauro
closed
1 year ago
2
Implement _GALAXY_JOB_TMP_DIR.
#292
jmchilton
closed
3 years ago
0
Need better logging/handling when there are staging and MQ publishing problems
#291
natefoo
closed
1 year ago
1
Enable globbed from_work_dir outputs for remote metadata
#290
mvdbeek
closed
3 years ago
0
Remove pulsar/util/pastescript?
#289
bernt-matthias
opened
3 years ago
0
Remove Python <=3.5 code
#288
nsoranzo
closed
3 years ago
0
Support the k8s_job_ttl_secs_after_finished option as in the Galaxy Kubernetes runner
#287
natefoo
closed
2 years ago
0
Kubernetes Coexecution jobs are only removed under some circumstances
#286
natefoo
opened
3 years ago
0
Remote metadata doesn't work with globs in from_work_dir outputs
#285
natefoo
closed
3 years ago
0
Clean the job directory when new jobs are received
#284
natefoo
opened
3 years ago
2
Large stdout/stderr crashes the acknowledgement manager, results in stuck jobs
#283
natefoo
opened
3 years ago
4
avoid using getcwd() in cli module pattern matching
#282
martenson
opened
3 years ago
0
unable to load LocalShell
#281
martenson
closed
1 year ago
1
Drop metadata directory hacks for pre-16.04 Galaxies.
#280
jmchilton
closed
3 years ago
0
Rev job script code against latest Galaxy dev.
#279
jmchilton
closed
2 years ago
0
Fix memory_statement.log being written to working directory.
#278
jmchilton
closed
3 years ago
1
memory_statement.log doesn't respect metadata directory
#277
jmchilton
closed
3 years ago
0
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