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galaxyproject
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pulsar
Distributed job execution application built for Galaxy
https://pulsar.readthedocs.io
Apache License 2.0
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Don't error out if annotated galaxy.json is absent.
#270
jmchilton
closed
3 years ago
0
Implement dynamic file sources abstraction for parsing files to transfer from galaxy.jsons
#269
jmchilton
closed
3 years ago
1
[WIP] Fix dynamic pattern for uuids?
#268
jmchilton
opened
3 years ago
0
Attempt to fix local manager not respecting command exit codes.
#267
jmchilton
closed
3 years ago
1
Use tool classes to only test remote Galaxy tools.
#266
jmchilton
closed
3 years ago
1
Is this needed for branching to work?
#265
jmchilton
closed
3 years ago
0
Run Galaxy framework tests against dev and master branches of Galaxy
#264
mvdbeek
closed
3 years ago
2
Support Galaxy Expression Tools in Pulsar
#263
jmchilton
opened
3 years ago
1
Fix Galaxy composite input references.
#262
jmchilton
closed
3 years ago
3
Accept description of tool files to transfer from Galaxy.
#261
jmchilton
closed
3 years ago
0
Transfer entire tool directory instead of picking apart the generated command line to find tool files to transfer
#260
natefoo
closed
3 years ago
16
Run galaxy's tool framework tests against this repo's pulsar
#259
mvdbeek
closed
3 years ago
3
Allow from_work_dir output stage out failure
#258
natefoo
closed
3 years ago
1
Support globs in from_work_dir outputs
#257
natefoo
closed
3 years ago
0
Fix loading the Galaxy dependency resolvers config, plus additional config directory fixes
#256
natefoo
closed
3 years ago
0
Move $_GALAXY_JOB_HOME_DIR out of /working dir
#255
mvdbeek
closed
3 years ago
1
Slurm broken in CI
#254
jmchilton
closed
1 year ago
1
Expose file_actions via job destination parameters.
#253
jmchilton
closed
3 years ago
0
Update Planemo for CI testing.
#252
jmchilton
closed
3 years ago
1
Send fewer files when doing extended & remote metadata.
#251
jmchilton
closed
3 years ago
0
Batch-mode Pulsar
#250
jmchilton
opened
3 years ago
0
Files in __tool_directory__ not transfered
#249
abretaud
closed
3 years ago
3
Poster Dependency for pulsar.
#248
cibinsb
closed
3 years ago
1
Small fix for starting pulsar in webless mode
#247
gregvonkuster
opened
3 years ago
0
Set resource limits and walltime for k8s coexecution pods
#246
natefoo
closed
3 years ago
2
Update coexecution container Dockerfile for 0.14.1
#245
natefoo
closed
3 years ago
0
Version 0.14.1
#244
natefoo
closed
3 years ago
0
Convert tests from Travis and nose to Github actions and pytest
#243
natefoo
closed
3 years ago
3
Set --manager when running in coexecution mode and a manager name is set on the client manager.
#242
natefoo
closed
3 years ago
1
Cloud support
#241
innovate-invent
closed
1 year ago
3
Glob/wildcard in from_work_dir outputs doesn't work
#239
natefoo
closed
3 years ago
9
Admin WG - Collected Pulsar Issue(s)
#240
hexylena
closed
3 years ago
12
Better error handling when setting up environment statements
#238
natefoo
opened
3 years ago
1
Release version 0.14.0
#237
natefoo
closed
3 years ago
3
Pin direct dependency versions and do a final Python 2.7 release.
#236
natefoo
closed
3 years ago
1
Update documentation
#235
natefoo
closed
3 years ago
4
Separate tool and set_meta execution environments and stdio streams
#234
natefoo
closed
1 year ago
1
Make a final Python 2.7 release of 0.13?
#233
natefoo
closed
3 years ago
2
fix the PyYAML "load() deprecation" warning
#232
gmauro
closed
3 years ago
6
Drop Python 2.7 support in standard transport, drop Python 2.7 tests and fix Python 3.7 wheel install test, general test debugging enhancements
#231
natefoo
closed
3 years ago
6
Set the DRMAA workingDirectory to the job's working directory
#230
natefoo
closed
3 years ago
1
Fix a unicode issue and polish a bit of variables
#229
gmauro
closed
3 years ago
3
Respond to MQ messages requesting status updates.
#228
jmchilton
closed
4 years ago
2
REST connections break with Py3 using standard transport
#227
AndreasSko
closed
3 years ago
2
drop python 2.6 and add 3.7 and update the testing infrastructure to a more recent Ubuntu setup
#226
bgruening
closed
4 years ago
1
Use is_alive in favour of isAlive for Python 3.9 compatibility.
#225
tirkarthi
closed
4 years ago
4
isAlive has been deprecated and removed in favor of is_alive in Python 3.9
#224
tirkarthi
closed
4 years ago
0
Request and register ports for ITs.
#223
jmchilton
closed
4 years ago
0
Setup Kubernetes with ports if needed for ITs.
#222
jmchilton
closed
4 years ago
0
Implement killing k8s jobs.
#221
jmchilton
closed
4 years ago
2
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