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garikoitz
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launchcontainers
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trying to make the documentation more beautiful
#39
yongninglei
closed
1 year ago
0
in run mode, we only need to pass the config_lc.yaml
#38
garikoitz
opened
1 year ago
1
Remove all the cluster messages when prepare mode is being run
#37
garikoitz
closed
11 months ago
1
create the requirement.txt file so that we can create with pip or conda
#36
garikoitz
closed
11 months ago
1
after issue#23
#35
yongninglei
closed
1 year ago
0
Issue/23
#34
yongninglei
closed
1 year ago
2
update the host options
#33
yongninglei
closed
1 year ago
0
add instructions and link to code to do NORDIC preprocessing
#32
garikoitz
opened
1 year ago
0
add instructions and link to code to do presurfer for MP2RAGE preprocessing
#31
garikoitz
opened
1 year ago
0
Add prfprepare
#30
garikoitz
opened
1 year ago
0
Add fmriprep
#29
garikoitz
opened
1 year ago
0
Add heudiconv
#28
garikoitz
opened
1 year ago
0
copy config.json in derivatives/container_version/analysis-X/sub-X/ses-X/
#27
leandrolecca
closed
1 year ago
1
New operative to launchcontainers
#26
leandrolecca
closed
1 year ago
3
anatrois config.json 'freesurfer_license'
#25
leandrolecca
closed
1 year ago
1
make default subject name 'SXXX'
#24
leandrolecca
closed
1 year ago
1
Right now 'force' needs to be False in order to make it work
#23
leandrolecca
closed
1 year ago
3
Do not copy lc_config.yaml file in nifti folder
#22
leandrolecca
closed
1 year ago
1
tiger master to gari master
#21
yongninglei
closed
1 year ago
0
refarcotory using dask, and now it's pure python
#20
yongninglei
closed
1 year ago
0
Create package structure
#19
genhayes
closed
1 year ago
0
Parallelize code in clusters using dask
#18
genhayes
closed
1 year ago
0
maxwall error when host is bcbl
#17
MengxingLiu
closed
2 years ago
1
add queue/partition support
#16
MengxingLiu
closed
2 years ago
0
update queue for slurm in EDR
#15
MengxingLiu
closed
2 years ago
0
update queue name for Slurm sys in EDR
#14
MengxingLiu
closed
2 years ago
0
fix nibabel import bug
#13
MengxingLiu
closed
3 years ago
0
add DIPC features
#12
MengxingLiu
closed
3 years ago
0
use /lscratch as temporary system while in DIPC
#11
MengxingLiu
closed
3 years ago
0
add exception for subjects who have no pre_fs
#10
MengxingLiu
closed
3 years ago
0
modifications
#9
leandrolecca
closed
3 years ago
1
host variable addition in qsub for BCBL
#8
leandrolecca
closed
3 years ago
1
version available for BCBL and DIPC servers
#7
leandrolecca
closed
3 years ago
0
update
#6
leandrolecca
closed
3 years ago
0
qsub_generci.sh
#5
garikoitz
closed
3 years ago
1
This version has Mengxings edits but Gari had to edit to make it work…
#4
garikoitz
closed
3 years ago
0
Add the variables we edit in the files (createSymLinks.py and qsub_generic.py) to be command line inputs (the best thing is to create a json file with all variables specifics to the call)
#3
garikoitz
closed
3 years ago
2
Separate bcbl from dipc for most of the variables
#2
garikoitz
closed
3 years ago
1
This version has Mengxings edits and Garis edits in top of that to ma…
#1
garikoitz
closed
3 years ago
0
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