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gaynorr
/
AlphaSimR
R package for breeding program simulations
https://gaynorr.github.io/AlphaSimR/
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Develop repository of Breeding program templates
#125
gregorgorjanc
opened
1 year ago
0
Write vignette on how to import data
#124
gregorgorjanc
opened
1 year ago
1
Write GenomicSelection vignette
#123
gregorgorjanc
opened
1 year ago
1
Write QuanGen vignette
#122
gregorgorjanc
opened
1 year ago
0
Revise help pages
#121
gregorgorjanc
opened
1 year ago
0
Expand the MultiPop functionality
#120
gregorgorjanc
opened
1 year ago
7
Expand getPed() with a recursive argument
#119
gregorgorjanc
opened
1 year ago
1
Sample SNP array markers with ascertainment bias by default
#117
gregorgorjanc
opened
1 year ago
2
Committing version 1.4.0
#116
gaynorr
closed
1 year ago
2
Issues with IBD tracking
#114
janaobsteter
closed
1 year ago
2
Report realised genic variances (possibly also expected?)
#113
gregorgorjanc
opened
1 year ago
3
Fix to issue 110 (sortPed)
#111
AudreyAAMartin
closed
1 year ago
1
sortPed function bug
#110
AudreyAAMartin
closed
1 year ago
7
Better GE rate simulation?
#108
jamonterotena
closed
1 year ago
3
We need to speed up setMisc and getMisc
#107
gregorgorjanc
closed
7 months ago
15
Version 1.3.4
#105
gaynorr
closed
1 year ago
0
Version 1.3.3
#103
gaynorr
closed
1 year ago
1
Bugfix for covE #101
#102
gregorgorjanc
closed
1 year ago
1
Bug with new residual covariances
#101
gregorgorjanc
closed
1 year ago
3
Report if user-provided covariance is not positive definitely
#98
gregorgorjanc
closed
1 year ago
1
Get AlphaSimR internet domain
#96
gregorgorjanc
closed
1 year ago
1
Document calculation of statistical genetic values
#95
gregorgorjanc
opened
1 year ago
1
Write vignette on recombination
#94
gregorgorjanc
opened
1 year ago
3
Version 1.3.2
#93
gaynorr
closed
1 year ago
0
setMarkerHaplo/Geno removes trait names for gv
#91
janaobsteter
closed
1 year ago
1
Pedigree after calling reduceGenome() or doubleGenome() is identical with keepParents = TRUE or keepParents = FALSE
#90
philipbg
closed
1 year ago
1
Can recHist tell the grandparental haplotype?
#87
jamonterotena
closed
1 year ago
1
Fixing #83 by adding another nInd=1 corner case in genParam()
#86
gregorgorjanc
closed
1 year ago
2
bv() fails on a population with one member when we have more than 1 trait
#83
gregorgorjanc
closed
1 year ago
2
Updating devel
#80
gaynorr
closed
1 year ago
0
Improved pedigreeCross
#79
gaynorr
opened
1 year ago
0
Bug in runMacs
#78
gaynorr
closed
1 year ago
3
Devel
#77
gaynorr
closed
1 year ago
0
Change SimParam$setVarE to accept covariance matrix
#73
gregorgorjanc
closed
1 year ago
3
We can not create an empty, yet, functional Population
#72
gregorgorjanc
closed
1 year ago
6
Adding tinytex to R-CMD-check workflow
#69
gaynorr
closed
1 year ago
0
Devel
#68
gaynorr
closed
1 year ago
1
Devel
#67
gaynorr
closed
1 year ago
0
Exporting is* functions
#66
gregorgorjanc
closed
1 year ago
0
Change "allele" parameter in editGenome() to "genotype"?
#65
janaobsteter
closed
1 year ago
6
Devel
#64
gaynorr
closed
2 years ago
0
Are correlation/covariance parameters stored in the SP object?
#63
poca87
closed
1 year ago
2
Devel
#62
gaynorr
closed
2 years ago
0
Should we add a pedigree function?
#60
gregorgorjanc
closed
1 year ago
1
Add name slot to population class?
#59
gregorgorjanc
closed
1 year ago
3
writePlink doesn't work when chromosomes with different lengths are simulated
#58
alanaselli
closed
1 year ago
2
Allow for the user to pick haplotype-pairs when creating a new Pop-class from Map-Pop
#57
janaobsteter
closed
1 year ago
2
Develop nicer pkgdown webpage
#56
gregorgorjanc
closed
1 year ago
0
Explore adding tree sequences to AlphaSimR
#55
gregorgorjanc
closed
1 year ago
1
Show in SimParam on how to access pedigree and recHist
#53
gregorgorjanc
opened
2 years ago
4
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