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go-releases
Tasks and notes for monthly GO releases
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2023-07-27 Release candidate stats
#42
pgaudet
closed
1 year ago
0
2023-07-21 Release candidate stats
#41
pgaudet
closed
1 year ago
0
+7.27% IEAs =>> 122636 / 1686504
#40
pgaudet
closed
1 year ago
5
Dicty lost all annotations except for IBAs
#39
pgaudet
closed
1 year ago
2
Check changes in uniprot-all file name https://github.com/geneontology/pipeline/issues/320#issuecomment-1495119262
#38
pgaudet
closed
1 year ago
1
Create and integrate GOA species-centric files
#37
pgaudet
opened
1 year ago
2
Major changes 2023-06-10 Release candidate
#36
pgaudet
closed
1 year ago
3
2023-06-11 Release candidate stats
#35
pgaudet
closed
1 year ago
0
FlyBase will provide a GPI file by by mid-June 2023
#34
pgaudet
closed
1 year ago
1
Other changes
#33
pgaudet
closed
1 year ago
1
Major change: + 3.15% IBAs
#32
pgaudet
closed
1 year ago
1
2023-05-10 Release candidate stats
#31
pgaudet
closed
1 year ago
0
Source RGD GAF sometimes only includes RGD IDs for ISO pubs and not GO_REFs
#30
cmungall
opened
1 year ago
0
MGI GAF includes PRO isoforms in col2
#29
cmungall
opened
1 year ago
3
MGI reference issues
#28
pgaudet
closed
1 year ago
3
ZFIN file 'broken' - Pascale to investigate to see if data is restored (IEAs and IBAs) Doug "We are stuck on the GOA GAF load because the file we get from GOA is broken so we are stuck with an old file until they can get us a new one." AI: wait for one release, check again ===>> After March 15th AI: Pascale: ask Doug for unmapped identifiers
#27
pgaudet
closed
1 year ago
4
ISO questions for RGD
#26
pgaudet
opened
1 year ago
4
2023-04-01 Release candidate stats
#25
pgaudet
closed
1 year ago
4
Some annotations are filtered in goa-human.gaf file
#24
pgaudet
opened
1 year ago
1
Explore loading Proteomes (https://www.ebi.ac.uk/GOA/proteomes) data (rather than invidual files).
#23
pgaudet
opened
1 year ago
1
GeneDB issues
#22
pgaudet
opened
1 year ago
5
Some XenBase IEA annotations are stale or will be soon
#21
pgaudet
closed
1 year ago
1
Changing Ecoli source data: from EcoWiki to EcoCyc
#20
pgaudet
closed
1 year ago
4
E coli data restored
#19
pgaudet
closed
1 year ago
0
2023-03-03 Release candidate stats
#18
pgaudet
closed
1 year ago
0
2023-03-01 Release candidate still missing E. coli annotations
#17
pgaudet
closed
1 year ago
1
2023-03-01 Release candidate (FAILED) stats
#16
pgaudet
closed
1 year ago
0
CGD annotations restored =>> OK
#15
pgaudet
closed
1 year ago
0
ZFIN: still 14k IEA annotations missing, similar to 2023-02-10 release attempt
#14
pgaudet
closed
1 year ago
0
New reference: EcoCyc_REF
#13
pgaudet
closed
1 year ago
1
2023-02-23 BLOCKING: Ecoli missing all annotations, except for IBAs
#12
pgaudet
closed
1 year ago
0
2023-02-23 Release candidate (FAILED) - Blocking issues
#11
pgaudet
closed
1 year ago
0
Switching E. coli source to GOA - issues with GAF file
#10
pgaudet
closed
1 year ago
0
2023-02-23 Release candidate (FAILED) stats
#9
pgaudet
closed
1 year ago
0
ZFIN - Danio's IEA issues
#8
pgaudet
closed
1 year ago
0
Out of date IEA from Ecoli + ZFIN
#7
pgaudet
closed
1 year ago
1
CGD lost 148k IEA annotations
#6
pgaudet
closed
1 year ago
0
2023-02-10 Release candidate (FAILED) - Major changes
#4
pgaudet
closed
1 year ago
1
2023-02-10 (FAILED) Release candidate stats
#3
pgaudet
closed
1 year ago
0
2023-01-02 Release stats
#2
pgaudet
closed
1 year ago
0
2023-01-02 Release candidate - Major changes
#1
pgaudet
closed
1 year ago
0
Problem with RGD Annotation extension
#47
RLovering
opened
3 years ago
7
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