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genetics-of-dna-methylation-consortium
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godmc_phase2
This repository contains the code to run the analysis pipeline for phase 2 of goDMC released June 2024.
GNU General Public License v3.0
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shapiro for sample over 5000 on danmage.
#77
SiyiSEA
opened
1 day ago
0
[Bug]: cannot upload file when -c is used
#75
SiyiSEA
opened
5 days ago
0
shapiro test enhancement
#74
SiyiSEA
closed
4 days ago
0
[Code Refactor]: shapiro test for smoking prediction
#73
SiyiSEA
closed
4 days ago
0
check and upload smoke plot
#72
SiyiSEA
closed
1 day ago
0
[Code Refactor]: smoking plot for 11c
#71
SiyiSEA
closed
1 day ago
0
[Bug]: upload of results for script 08
#70
epzjlm
opened
1 week ago
0
[Bug]: 14-nc886_gwas.sh; Error: Duplicate ID when using family data
#69
ks164
opened
1 week ago
0
[Bug]: 03b halts when using family data
#68
ks164
opened
1 week ago
0
Update check_results.sh
#67
hannah-e
closed
1 week ago
0
Update check_results.sh
#66
ZXiaopu
closed
2 days ago
0
Update 11c-check_compress_data.sh update file types
#65
hannah-e
closed
1 week ago
0
[Bug]: lack information on sex chromosomes
#64
SunYidan2021
opened
2 weeks ago
2
updated QQplot file type in 10a
#63
hannah-e
closed
2 weeks ago
0
[Bug]: 4e path issue
#62
drsora
opened
2 weeks ago
0
[Bug]: 9 stops at AD EWAS
#61
drsora
opened
2 weeks ago
1
[Bug]: ./check_upload.sh 03d check returns error: no method for 03d in check_results.sh
#60
hannah-e
closed
1 week ago
0
[Bug]: 11c-check_compress_data.sh qqplot outputs are .jpeg not .png
#59
hannah-e
closed
1 week ago
1
chrX coding
#58
epzjlm
opened
2 weeks ago
0
[Bug]: chrX coding
#57
epzjlm
opened
2 weeks ago
0
[Bug]: Install ggpubr
#56
SunYidan2021
closed
5 days ago
3
[Bug]: 4a error
#55
drsora
closed
1 week ago
5
[Bug]: ./10a-gwas_aar.sh: Error: the V matrix is not invertible
#54
ks164
opened
3 weeks ago
2
PRS fix bug
#53
msolerartigas
closed
3 weeks ago
0
qq plot extension fix2
#52
SiyiSEA
closed
3 weeks ago
0
update the qq plot extension
#51
SiyiSEA
closed
3 weeks ago
0
[Bug]: 03 check upload qqplot issue
#50
drsora
closed
3 weeks ago
0
update adjust pedigree
#49
ZXiaopu
closed
4 weeks ago
0
[Bug]: ./09-PRS_EWAS: Correlation plots for PRS and non genetic methylation PCs generated
#48
ks164
opened
1 month ago
4
03g issue with cg07959070
#47
SiyiSEA
closed
4 weeks ago
9
fix infinite ylim plot in plot_gwas.R
#46
SiyiSEA
closed
1 month ago
0
move common set up into single setup shell script and git pull command
#45
ejh243
closed
3 weeks ago
10
[Bug]:
#44
EvansKip1
closed
1 month ago
4
[Enhancement suggestion]: add automatic git pull command
#43
ejh243
closed
3 weeks ago
0
Change stop function to message function
#42
ZXiaopu
closed
1 month ago
0
03g: need finite ylim for plots
#41
ks164
closed
1 month ago
3
solve issue - no PCs remained
#40
ZXiaopu
closed
1 month ago
0
[Bug]: no non-genetic PCs remained
#39
ZXiaopu
closed
1 month ago
1
fix typo on dnadensity
#38
SiyiSEA
closed
1 month ago
0
[Bug]: typo of dnadensity
#37
SiyiSEA
closed
1 month ago
0
[Bug]: 03g: need finite 'ylim' for plots
#36
ks164
closed
1 month ago
1
[Bug]: Error when trying to upload results from module 14
#35
feichel
closed
1 month ago
1
[Bug]: 09 - Error in psoriasisNOHLA EWAS
#34
feichel
closed
1 month ago
2
modify mapper path
#33
ZXiaopu
closed
1 month ago
0
fix bug to allow files with only 1 methylation PC
#32
msolerartigas
closed
1 month ago
0
[Bug]: ./09-PRS_EWAS.sh
#31
MarineGermainINSERM
closed
1 month ago
2
add flag for plink to recognise 23 as chrX
#30
ejh243
closed
1 month ago
0
fix typo in filename of config files to upload.
#29
ejh243
closed
1 month ago
0
[Bug]: incorrect file path for config upload
#28
ejh243
closed
1 month ago
0
fix issue 23
#27
ZXiaopu
closed
1 month ago
0
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