genetics-statistics GEMMA issues

genetics-statistics / GEMMA

Genome-wide Efficient Mixed Model Association

https://github.com/genetics-statistics/GEMMA

GNU General Public License v3.0

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issues

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Difficulties in understanding mvLMM output

#236 shafiqnoa closed 4 years ago
1
Additive effect

#235 pjotrp opened 4 years ago
0
Allow and describe options for disabling filters

#234 pjotrp opened 4 years ago
6
Fix Travis CI

#233 pjotrp closed 4 years ago
2
Possibel way to output the random effects?

#232 TeaByrd closed 4 years ago
0
Issue with all SNPs being filtered out

#231 jenncoughlan closed 3 years ago
0
-lopenblas library not found

#230 Marisa89 closed 4 years ago
4
GSL ERROR: matrix is singular in lu.c at line 262 errno 1 mvLMM 19 phenotypes

#229 TeaByrd closed 4 years ago
1
GSL ERROR: matrix is singular in lu.c at line 262 errno 1

#228 pwang16 closed 4 years ago
3
GSL ERROR

#227 voichek closed 4 years ago
2
mvLMM results in exactly zero (0.000000e+00) p-values

#226 dgarrimar closed 3 years ago
1
Including -gxe produces error: GSL ERROR: function value is not finite in brent.c at line 58 errno 9

#225 DeWitP closed 4 years ago
2
after 72 hours running, there was no output results

#224 xiaoxihe closed 4 years ago
3
Generating Kinship Matrix

#223 baigal628 closed 4 years ago
2
GSL ERROR: function value is not finite in newton.c at line 88 errno 9

#222 baigal628 closed 4 years ago
3
two questions on mvLMM

#221 arkyl closed 4 years ago
4
ERROR: Enforce failed for Problem reading FAM file (phenotypes out of range) in src/gemma_io.cpp at line 600 in ReadFile_fam

#220 Jarod-R closed 4 years ago
5
ERROR: Enforce failed for file_kin .cXX.txt

#219 jdleal closed 4 years ago
0
Gemma Conda version is really slow

#218 yujun2017 closed 4 years ago
1
Coding discrete covariates

#217 pkothiyal closed 4 years ago
2
Build time test suite error in Debian package

#216 tillea closed 4 years ago
7
ERROR：number of total SNPs/var do not equal to number of analyzed SNPs

#215 wangxuann1995 closed 4 years ago
2
ERROR: Enforce failed for number of analyzed individuals equals 0. in src/param.cpp at line 2061 in ProcessCvtPhen

#214 alioniya closed 4 years ago
3
error writing file

#213 avdanurag closed 4 years ago
2
possible bug using the -mk flag?

#212 yluo86 closed 4 years ago
1
Bug of genetic correlations estimates i cannot solve.

#211 liyi522 closed 4 years ago
0
GSL ERROR: function value is not finite in brent.c at line 202 errno 9

#210 peterdfields closed 2 years ago
26
Include Cov(\sigma^{2}) in output for variance component model (w/ sum stats)

#209 julirsch opened 5 years ago
3
Why don't output marker R2(pve of marker)?

#208 xiekunwhy closed 5 years ago
2
n*3 relationship matrix

#207 irn-alex closed 5 years ago
1
Multiple phenotypes

#206 wangxuann1995 closed 4 years ago
0
undefined reference error

#205 samfux84 closed 5 years ago
2
Reading SNPs Error

#204 glagunas closed 3 years ago
3
Multithreading

#203 outpaddling closed 5 years ago
3
Relatedness matrix inputs

#202 asafpr closed 4 years ago
0
FreeBSD port available

#201 outpaddling closed 4 years ago
1
GSL 2.x

#200 outpaddling closed 4 years ago
1
Is it possible to ask GEMMA output test statistics instead of p-values?

#199 taojiang608 closed 4 years ago
0
GEMMA with pruned GRMs

#198 bstpourcain closed 5 years ago
1
List filtering results of individual filters

#197 pjotrp closed 4 years ago
1
Problem with variance component estimation with multiple covariance matrices

#196 YKunKK closed 4 years ago
0
The different result from emma

#195 hmu5050 closed 4 years ago
0
Merge K and LMM into one run

#194 pjotrp closed 4 years ago
1
Create 0.99 release

#193 pjotrp closed 4 years ago
3
GSL error breaks LOCO

#192 danfulop closed 5 years ago
4
Interesting observation of BSLMM computational time

#191 MeiyueComputBio closed 4 years ago
0
Enforce failed for Bad RS format in src/gemma_io.cpp at line 296 in ReadFile_anno

#190 germmtz opened 5 years ago
1
Regression for some architectures (arm64 and mips64el)

#189 tillea closed 3 years ago
16
Different results using GEMMA 0.98 vs. GEMMA 0.96

#188 voichek closed 5 years ago
13
When genotype values are not in 0.0-2.0 range no error is reported and MAF filter is wrong

#187 pjotrp closed 5 years ago
0

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