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genome-nexus
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genome-nexus-importer
Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
MIT License
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Simplify makefile gzip/gunzip
#44
inodb
opened
3 years ago
0
Feature request to show "germline biallelic" statistics in the portal
#43
cband
closed
3 years ago
1
Support CCDS2Sequence override file
#42
onursumer
closed
3 years ago
0
Update signal data
#41
leexgh
closed
3 years ago
0
Mapping enst to uniprot
#40
leexgh
closed
3 years ago
0
Add clinvar
#39
leexgh
closed
3 years ago
0
Import data in builder container
#38
nr23730
closed
3 years ago
0
Import more variant stats into signal db
#37
onursumer
closed
3 years ago
3
Map transcripts to Uniprot accession
#36
leexgh
closed
3 years ago
1
Make sure signal mutation chromosome values are always strings
#35
onursumer
closed
4 years ago
0
Update Docs w/ MongoDB version
#34
averyniceday
closed
4 years ago
0
Update Mongo to use bitnami/mongodb
#33
averyniceday
closed
4 years ago
1
Initialize mongo database with latest mongodump from "genome-nexus-mongo-dump" s3 bucket.
#32
ao508
closed
4 years ago
1
Transcript analysis (Grch37/38) - Log
#31
zhx828
opened
4 years ago
6
download oncokb cancer genes list and import to database
#30
leexgh
closed
4 years ago
0
Renamed all references of insight to signal
#29
onursumer
closed
4 years ago
0
Workaround for NA values in columns Start_Position and End_Position
#28
onursumer
closed
4 years ago
0
Updated with the latest insight data
#27
onursumer
closed
4 years ago
0
Update PFAM to version 32
#26
inodb
opened
4 years ago
0
Conda environment for import pipeline
#25
SRodenburg
opened
5 years ago
0
Mouse import pipeline
#24
SRodenburg
closed
5 years ago
0
Added new biallelic mutations file and updated the import script
#23
onursumer
closed
5 years ago
0
Support mouse annotations
#22
inodb
opened
5 years ago
3
Added import scripts for MSK Insight mutations
#21
onursumer
closed
5 years ago
0
Update plcg2 isoform
#20
inodb
closed
5 years ago
0
Fix entrez_gene_id column name
#19
inodb
closed
5 years ago
0
entrez_gene_id missing
#18
inodb
closed
5 years ago
0
Added a script to add ENST id to PTM files
#17
onursumer
closed
5 years ago
1
Configurable reference genome and Ensembl release, and add GRCh38 Ensembl92 data
#16
sandertan
closed
5 years ago
0
GRCh38 data, documentation and pipeline improvements
#15
sandertan
closed
5 years ago
1
Add CCDS id to ensembl transcript
#14
inodb
closed
5 years ago
0
Add refseq mrna id to ensembl transcript
#13
inodb
closed
5 years ago
0
Add transcript id for all hotspots
#12
inodb
closed
6 years ago
1
entrez_gene_id stored as float in export/
#11
inodb
opened
6 years ago
0
Add UTRs to transcript info
#10
sandertan
closed
6 years ago
5
Add data and documentation that was missing
#9
sandertan
closed
6 years ago
1
Use isoform_overrides_uniprot_from_biomart_91
#8
inodb
closed
6 years ago
0
Add filtered hotspot data to database
#7
inodb
closed
6 years ago
0
Import Cancer Hotspots Data
#6
onursumer
closed
6 years ago
1
Follow up analysis uniprot hg19 and overlap hugo
#5
inodb
closed
6 years ago
0
Use hgnc data dump to link hugo to ensembl gene id
#4
inodb
closed
6 years ago
0
Add exon info to ensembl_biomart_transcripts.json
#3
inodb
closed
6 years ago
2
Add testing for generation of ensembl json
#2
inodb
opened
6 years ago
0
Add nested Hugo Symbol to ensembl transcripts
#1
inodb
closed
6 years ago
1
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