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genome
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gms
The Genome Modeling System installer
https://github.com/genome/gms/wiki
GNU Lesser General Public License v3.0
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schema errors during Make are not caught
#163
gatoravi
opened
9 years ago
1
Genome::Sys::Lock::backends error
#162
malachig
opened
9 years ago
19
Add notes to the GMS paper regarding ISO/IEC 9126.
#161
sakoht
closed
9 years ago
2
Do a fresh merge from master for genome.
#160
sakoht
opened
9 years ago
10
Try the installation on a Debian system.
#159
malachig
opened
9 years ago
3
reduce lsf resource requirement for RNASeq pipeline.
#158
gatoravi
opened
9 years ago
11
Import test data into public AWS instance of sGMS and set up builds but do not run them.
#157
malachig
opened
9 years ago
0
Transition from use of 'gms-pub' branch of 'gms-core' repo to 'gms-pub' branch of 'genome' repo
#156
malachig
closed
9 years ago
1
vm vagrant install fails with rake-10.1.1 error
#155
malachig
closed
9 years ago
8
Update installer to use latest versions of Vagrant and VirtualBox
#154
malachig
closed
9 years ago
3
Collect testimonials from beta users
#153
obigriffith
opened
10 years ago
0
Document disk usage stats for various GMS tests
#152
malachig
closed
10 years ago
1
Make a tutorial that describes how to create new processing profiles based on existing ones
#151
malachig
closed
10 years ago
3
Conduct a review of existing analysis platform options and summarize in a Supplementary Table
#150
malachig
closed
10 years ago
3
Test sGMS install on Amazon EC2
#149
malachig
closed
10 years ago
8
When installing sGMS via `make vminit` the installer only support certain host systems - make this clear
#148
malachig
closed
10 years ago
3
Document creation of certain auxiliary data used in the GMS
#147
malachig
closed
10 years ago
10
Test sGMS install on OpenStack and provide specific instructions (tutorial) for using OpenStack
#146
malachig
closed
10 years ago
3
Somatic Validation Build Fails on 1/10 Percent Downsampled Data
#145
ghost
closed
10 years ago
6
minor issues with tutorial on importing data
#144
obigriffith
closed
10 years ago
4
empty microarray CNV plots on clinseq-builds.
#143
gatoravi
closed
10 years ago
2
Streamline configuration of system for testing in low resource environments
#142
malachig
closed
10 years ago
2
Document installation of the GMS using Docker
#141
malachig
closed
10 years ago
5
Somatic-variation fails during 'Annotate And Upload Variants'
#140
malachig
closed
10 years ago
8
How do I clean up an orphaned allocation?
#139
malachig
closed
10 years ago
1
during installation: touch: cannot touch `/opt/gms/test': No such file or directory
#138
ghost
closed
10 years ago
10
gmt --help fails with perl autoloading error for Math/Combinatorics.pm
#137
malachig
closed
10 years ago
7
make vminit and make vm fail - "vboxsf file system is not available"
#136
malachig
closed
10 years ago
8
Package 'libapache2-mod-fastcgi' has no installation candidate
#135
ghost
closed
10 years ago
11
genome-db-cosmic-data branch '65_v1' is missing everything
#134
malachig
closed
10 years ago
2
Add some missing software to genome-snapshot-deps for precise and rebuild
#133
malachig
closed
10 years ago
3
update versions of joinx available for Ubuntu precise and the sGMS
#132
malachig
closed
9 years ago
6
can't abandon/stop running build
#131
obigriffith
closed
10 years ago
5
Update TST1 example clin-seq model to use correct processing profiles and DBs
#130
malachig
closed
10 years ago
3
Rename processing profiles
#129
obigriffith
closed
10 years ago
3
Create a 'TST1ds' so that testers using downsampled data can rsync much faster
#128
malachig
closed
10 years ago
1
clin-seq microarray cnv step fails if microarray builds do not have a successful build
#127
malachig
closed
10 years ago
3
Test 'renv' method of installing R from repo.gsc.wustl.edu
#126
malachig
closed
10 years ago
9
somatic-variation fails during create-report step (related to supporting callers?)
#125
malachig
closed
10 years ago
7
reference-alignments fail due to missing perl module 'Sort/strverscmp.pm'
#124
malachig
closed
10 years ago
4
Microarray builds failing with various warnings
#123
malachig
closed
10 years ago
19
How to create an APT tarball for sGMS.
#122
gatoravi
closed
10 years ago
4
clin-seq build fails due to missing software: circos
#121
malachig
closed
10 years ago
9
clin-seq build fails due to missing new version of bam-readcount
#120
malachig
closed
10 years ago
3
Update APT repo for Ubuntu precise to include new software that has been debian packaged
#119
malachig
closed
10 years ago
25
Schema update expects 'allocation_event_type' to be populated with allowed event types
#118
malachig
closed
10 years ago
2
Table 'result.software_result' has shortened column character length for field 'version' that is exceeded by data in the table
#117
malachig
closed
10 years ago
3
Clean up FTP staging dir to remove files not needed for sGMS installation or test runs
#116
malachig
closed
10 years ago
6
Can not start builds since merge
#115
malachig
closed
10 years ago
3
Update behavior of differential-expression model define and start
#114
malachig
closed
10 years ago
3
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