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genomic-medicine-sweden
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gms_16S
A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
GNU General Public License v3.0
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Keep syntax constrained to the Nextflow Language Specification
#28
samuell
opened
2 days ago
1
Run test with relative paths to find error
#27
samuell
opened
4 days ago
0
Add support for illumina
#26
bokelund
opened
2 weeks ago
0
Add continuous integration
#25
samuell
closed
2 weeks ago
1
Results in phyloseq format.
#24
bokelund
opened
3 weeks ago
0
Add continuous integration
#23
samuell
closed
2 weeks ago
0
Random idea: More recognizable name
#22
samuell
opened
4 weeks ago
1
Porting
#21
druvus
closed
2 months ago
0
Get reads assigned to a particular species
#20
Danieljaen
opened
3 months ago
1
add emu combine-outputs
#19
fwa93
opened
6 months ago
0
Fix some typos and formatting in README
#18
samuell
closed
6 months ago
1
save preprocessed reads for porechop_abi
#17
fwa93
opened
6 months ago
0
Create CODEOWNERS
#16
pbiology
closed
6 months ago
0
Change min quality default
#15
fwa93
closed
6 months ago
1
nanoplot creates the report for only one sample
#14
fwa93
closed
7 months ago
1
Add log file for EMU module
#13
fwa93
opened
7 months ago
0
Add support for pacbio
#12
fwa93
opened
7 months ago
0
Relative path + absolute path in command
#11
fwa93
opened
7 months ago
0
Versions to a file
#10
fwa93
closed
7 months ago
1
check that the tools are working properly.
#9
fwa93
opened
7 months ago
0
Addition of 18S/ITS identification
#8
ryanjameskennedy
opened
7 months ago
0
Find a place to store all databases for emu so that users can download them.
#7
fwa93
opened
1 year ago
0
Add visualizationfor the results.
#6
fwa93
opened
1 year ago
1
Add module porechop_abi
#5
fwa93
closed
1 year ago
1
Add Filtlong module
#4
fwa93
closed
1 year ago
1
Switch from fastqc to falco module
#3
fwa93
closed
1 year ago
1
Remove references to nf-core
#2
fwa93
opened
1 year ago
0
added link
#1
fwa93
closed
1 year ago
0