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getzlab
/
SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
MIT License
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21
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Fix README.md typo
#62
gpmoorhead1
closed
1 month ago
0
Removed --consensus_max_samples from command line arguments
#61
dpmerrell
closed
4 months ago
1
Boolean flag for consensus clustering
#60
dpmerrell
closed
4 months ago
0
Added max_samples for consensus clustering/consensus matrix
#59
dpmerrell
closed
4 months ago
0
Added wolF functionality
#58
evergreen700
closed
4 months ago
0
affinity kwarg renamed to metric in scikit-learn 1.4
#57
jcha40
closed
7 months ago
0
Use context manager to allow for safe keyboard interrupts
#56
jcha40
closed
7 months ago
0
updating outdated pandas functions for pcawg composite
#55
gpmoorhead1
closed
7 months ago
0
support other genomes like plant?
#54
yjiang296
closed
8 months ago
1
fixed pandas indexing issues
#53
cetienn01
closed
1 year ago
0
fixing context dictionary key syntax
#52
gpmoorhead1
closed
1 year ago
0
TypeError: Passing a dict as an indexer is not supported. Use a list instead.
#51
daz10000
closed
1 year ago
1
TypeError: DataFrame.dropna()
#50
sunyihong
closed
1 year ago
1
how the signature_stacked_barplot drawed?
#49
Spartanzhao
closed
1 year ago
1
A SignatureAnalyzer gpu docker image available?
#48
ryao-mdanderson
closed
8 months ago
3
Reverse complement debug for plotting
#47
yoakiyama
closed
1 year ago
0
Missing plot_results argument in CLI
#46
madisonjordan
closed
8 months ago
2
ValueError: zero-size array to reduction operation minimum which has no identity
#45
itsvenu
closed
4 months ago
3
Reverse complement debug
#44
yoakiyama
closed
2 years ago
0
Cosine Similarity Calculated Incorrectly for COSMIC References
#43
ConorMesser
closed
2 years ago
0
semi-supervised notebook example
#42
cchu70
closed
2 years ago
0
How to applied two-step signature extraction strategy with SignatureAnalyzer for hyper-mutated samples
#41
YingYa
closed
2 years ago
1
MemoryError: In RendererAgg: Out of memory
#40
YingYa
closed
2 years ago
2
ValueError if signatureanalyzer is used with Indels
#39
MaxiDoe
closed
2 years ago
1
KeyError when using cosmic3_SBS
#38
YingYa
closed
2 years ago
2
KeyError when using cosmic3_ID and cosmic3_DBS
#37
d-henness
closed
2 years ago
3
KeyError: 'Tumor_Sample_Barcode'
#36
ksingh1119
closed
2 years ago
8
Removal of SBS84, SBS85 from supervised example?
#35
DoaneAS
closed
2 years ago
2
ValueError
#34
hsiaoyi0504
closed
8 months ago
3
De novo signature extraction
#33
andreyurch
closed
2 years ago
1
bugfix in 1536 context count
#32
hurrialice
closed
3 years ago
0
pip 0.0.8 release
#31
madisonjordan
closed
4 months ago
0
added random seed flag
#30
shankara-a
closed
3 years ago
0
"Unusual context" error
#29
julieefeusier
closed
3 years ago
2
missingpy refers to outdated sklearn module structure
#28
julianhess
closed
3 years ago
2
Accept dataframe as argument
#27
julianhess
closed
3 years ago
0
signature_weighted_maf.tsv missing ~10% of variants from input maf
#26
MUppal
closed
3 years ago
2
Composite1536
#25
yoakiyama
closed
3 years ago
0
question
#24
mishugeb
closed
2 years ago
3
How to get the weights of signatures contributing to each tumor sample
#23
JiaweiDai-create
closed
3 years ago
1
Forcing signatures
#22
mishugeb
closed
4 years ago
3
Check hg build file before performing contig coercion
#21
jcha40
closed
4 years ago
0
GPU from spectra filte cannot reindex duplicate index
#20
njbernstein
opened
4 years ago
0
Incorrect shapes
#19
njbernstein
opened
4 years ago
1
KeyError: 'Tumor_Sample_Barcode'
#18
likelet
closed
4 years ago
2
NaN Value Check
#17
shankara-a
opened
4 years ago
0
runmaf function
#16
XuanYuXu
closed
2 years ago
1
Semisupervisednmf
#15
shankara-a
closed
3 years ago
0
Forcing "chr" prefix on chromosomes causes reference-MAF mismatches
#14
edawson
closed
4 years ago
1
Argument validation for input maf dataframe
#13
weinstockj
closed
4 years ago
3
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