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gks-anvil
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vrs_anvil_toolkit
Extract clinical variant interpretations from VCF using GA4GH VRS IDs
MIT License
2
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bug/leaks
#49
bwalsh
closed
8 months ago
0
feature/better-threaded-translator
#48
bwalsh
closed
7 months ago
3
research/python3.12-on-terra
#47
bwalsh
closed
23 hours ago
2
bug:logfile-alt-not-allele
#46
bwalsh
closed
8 months ago
0
feature/disable-progress-bars
#45
bwalsh
closed
8 months ago
0
feature/add-patient-specimen-metric
#44
bwalsh
closed
7 months ago
4
Feature/metakb
#43
bwalsh
closed
8 months ago
0
feature/removing-existing-cache
#42
quinnwai
closed
5 months ago
1
bugs/terra-testing
#41
bwalsh
closed
8 months ago
0
feature/terra-testing-results-analysis
#40
bwalsh
closed
7 months ago
5
gather data, prepare presentation
#39
quinnwai
closed
7 months ago
3
feature/figure-notebook
#38
bwalsh
closed
7 months ago
0
feature/query-metakb-cache
#37
bwalsh
closed
8 months ago
1
feature/delete-completed-file
#36
bwalsh
closed
7 months ago
2
feature/add-integration-test-collect-gs
#35
bwalsh
opened
8 months ago
0
Feature/gather scatter gather
#34
bwalsh
closed
8 months ago
0
feature/specialized-error-handling
#33
quinnwai
opened
8 months ago
1
Improve README
#32
quinnwai
closed
8 months ago
0
chore/tests-run-in-tmp-directory
#31
bwalsh
closed
8 months ago
0
feature/gather-scatter-gather
#30
bwalsh
closed
8 months ago
0
fix/move-cache-speed-test
#29
bwalsh
closed
7 months ago
1
chore/enforce-coding-conventions
#28
bwalsh
closed
8 months ago
0
Fix/cache dir
#27
bwalsh
closed
8 months ago
0
feature/configurable-directory-paths
#26
bwalsh
closed
8 months ago
0
chore/fix-coding-conventions
#25
bwalsh
closed
8 months ago
0
chore/rename-repo
#24
bwalsh
closed
7 months ago
2
feature/improve-readme
#23
bwalsh
closed
8 months ago
1
feature/cli
#22
bwalsh
closed
8 months ago
0
feature/packaging
#21
bwalsh
closed
8 months ago
0
Feature/packaging
#20
bwalsh
closed
8 months ago
1
Adds disk cache
#19
bwalsh
closed
8 months ago
0
Feature/gnomad formatting
#18
bwalsh
closed
8 months ago
0
Add 1000G test for small vcf
#17
quinnwai
closed
8 months ago
0
bug: tests/data/test_vcf_input.vcf expected errors?
#16
bwalsh
closed
7 months ago
3
research/multithreading-vs-multiprocessing performance
#15
quinnwai
closed
7 months ago
3
Add requirement for Python > 3.10
#14
quinnwai
closed
8 months ago
2
Test CachingAlleleTranslator with larger VCFs
#13
quinnwai
closed
8 months ago
0
Initial Scaling of VCF to Evidence Processing
#12
quinnwai
closed
8 months ago
0
Validate the VRS IDs of VRS objects in tests
#11
quinnwai
closed
8 months ago
5
Create normalize=True test for CachingAlleleTranslator
#10
quinnwai
closed
8 months ago
0
bug: Threading problem
#9
bwalsh
closed
8 months ago
1
feature: use diskcache
#8
bwalsh
closed
8 months ago
1
bug: Improve VCF -> gnomad formatting
#7
bwalsh
closed
8 months ago
0
Improve lookup by using HGVS id
#6
bwalsh
opened
8 months ago
1
Feature/threaded test
#5
bwalsh
closed
8 months ago
0
Small VCF Annotation: First Pass w/out Terra Testing
#4
quinnwai
closed
9 months ago
1
Send vrs identifiers to metakb service for evidence
#3
bwalsh
closed
7 months ago
6
Profile VRS IDs
#2
bwalsh
closed
8 months ago
1
Add a documented script to download and setup seqrepo and vrs-python
#1
bwalsh
closed
9 months ago
2
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