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glencoesoftware
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bioformats2raw
Bio-Formats image file format to raw format converter
GNU General Public License v2.0
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bioformats2raw in conda-forge or bioconda
#159
jkh1
closed
2 years ago
1
BioTek: refine field and channel name regexes
#158
melissalinkert
closed
2 years ago
2
Add group path to series index mapping in root attributes
#157
melissalinkert
closed
2 years ago
11
Add MetadataOnly to METADATA.ome.xml
#156
melissalinkert
closed
2 years ago
2
Add NGFF spec version to `--version` output
#155
melissalinkert
closed
2 years ago
0
`--pixel-type` behaves incorrectly
#154
melissalinkert
closed
1 year ago
0
checkstyle: update max line count to 10000
#153
melissalinkert
closed
2 years ago
0
Fix the type for acquisitions.id under the plate metadata
#152
sbesson
closed
2 years ago
3
Add info in installing via conda
#151
will-moore
closed
2 years ago
2
Explicitly forbid converting datasets with multiple plates
#150
melissalinkert
closed
2 years ago
0
HCS well sample/image mapping
#149
sbesson
closed
2 years ago
1
Update jzarr to 0.3.5
#148
melissalinkert
closed
2 years ago
1
Update to Bio-Formats 6.9.1
#147
melissalinkert
closed
2 years ago
0
MRXS: fix PNG tile support
#146
melissalinkert
closed
2 years ago
0
Delete memo files by default
#145
melissalinkert
closed
2 years ago
2
Expand axes tests to check for correct units
#144
melissalinkert
closed
2 years ago
3
MRXS: update how 2 channel fluorescence JPEG data is handled
#143
melissalinkert
closed
2 years ago
2
Add ND2 plate reader
#142
melissalinkert
closed
2 years ago
0
Update jna to 5.10.0 for arm64 support
#141
melissalinkert
closed
2 years ago
1
0.5.0 prep
#140
melissalinkert
closed
2 years ago
1
Conversion of image with uneven dimensions fails
#139
korseby
closed
2 years ago
18
Conversion of image with large dimensions fails
#138
korseby
closed
2 years ago
3
Add `MetadataOnly` to `METADATA.ome.xml`?
#137
melissalinkert
closed
2 years ago
3
Delete existing memo files by default?
#136
melissalinkert
closed
2 years ago
2
Version bumps
#135
melissalinkert
closed
2 years ago
2
First try at scale transforms
#134
melissalinkert
closed
2 years ago
3
Clarify that Java 8 is required
#133
melissalinkert
closed
2 years ago
0
Short option for flattened layout?
#132
melissalinkert
opened
2 years ago
0
Fix OME-NGFF metadata when writing flattened layout
#131
sbesson
closed
2 years ago
7
Stacking channels before converting to raw
#130
lstrgar
closed
2 years ago
3
Support and run tests on Java 17
#129
chris-allan
closed
2 years ago
0
MRXS: log instead of throwing an exception if a date cannot be parsed
#128
melissalinkert
closed
2 years ago
0
Null Pointer Exception error
#127
ajaysingh096
closed
2 years ago
6
Enumerate series in zarr metadata?
#126
melissalinkert
closed
2 years ago
0
Use our ome.external repository
#125
melissalinkert
closed
2 years ago
0
Unable to convert slides with PNG images
#124
xkacenga
closed
2 years ago
5
Feature/improve docker image
#123
ilveroluca
closed
2 years ago
4
Update to Bio-Formats 6.8.0
#122
melissalinkert
closed
2 years ago
0
Store dimension order using new "axes" spec
#121
melissalinkert
closed
2 years ago
2
Add new BioTek reader
#120
melissalinkert
closed
2 years ago
0
Fix problems with missing groups/metadata and sparse plates
#119
chris-allan
closed
2 years ago
6
Fix plate detection to ignore empty plates
#118
melissalinkert
closed
2 years ago
3
image shifted when converting
#117
vladpopovici
opened
3 years ago
4
Reduce total number of files when converting to OME-zarr?
#116
davidekhub
opened
3 years ago
4
Build using GitHub action
#115
jburel
closed
2 years ago
5
Allow to override min_size via command-line argument
#114
sbesson
closed
2 years ago
5
bump to ngff v0.3 (add support for axes)
#113
joshmoore
closed
2 years ago
4
Minor option handling fixes
#112
melissalinkert
closed
2 years ago
0
Add readme documentation for various output formatting options
#111
melissalinkert
closed
2 years ago
1
Conversion directly from imageplus
#110
K-Meech
closed
3 years ago
1
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