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glencoesoftware
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bioformats2raw
Bio-Formats image file format to raw format converter
GNU General Public License v2.0
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how to specify scale, translation, units
#207
d-v-b
closed
1 year ago
2
how to downsample isotropically
#208
d-v-b
opened
1 year ago
5
don't add extra dimensions
#209
d-v-b
closed
1 year ago
1
Batch processing
#206
Pablo1990
opened
1 year ago
1
Channel mass up into timestep
#205
tymiao1220
closed
1 year ago
2
Colors per channel are not the same than original .mrxs file
#204
ltalignani
closed
1 year ago
4
Update to new jzarr 0.4.2
#203
melissalinkert
closed
10 months ago
3
Set wildcard classpath on Windows
#202
melissalinkert
closed
1 year ago
1
Update Bio-Formats to 6.13.0
#201
melissalinkert
closed
1 year ago
0
Channel selection?
#200
blowekamp
closed
1 year ago
3
Throw an informative exception if OpenCV is used to downsample int8/int32
#199
melissalinkert
closed
1 year ago
0
Downsampling fails with MRC file created from tif2mrc
#198
blowekamp
closed
1 year ago
7
bioformats2raw produces big-endian data type (>u2) from MRC and CZI of unsigned int 16
#197
blowekamp
closed
1 year ago
4
Update manifest to include more properties
#196
melissalinkert
closed
1 year ago
0
use`--dimension-order`to overwrite one of Z/C/T axis to `position`?
#195
BioinfoTongLI
closed
1 year ago
7
NGFF-Converter 1.1.4 fails to convert CZI file which opens normally in Fiji using BioFormats
#194
zeissmicroscopy
opened
1 year ago
1
Downscale factor option
#193
will-moore
closed
1 year ago
3
Update to Bio-Formats 6.12.0
#192
melissalinkert
closed
1 year ago
1
Add a MapAnnotation describing the conversion
#191
melissalinkert
closed
11 months ago
2
Add getters and setters for each option
#190
melissalinkert
closed
1 year ago
7
upgrade setup_java action to v3.
#189
jburel
closed
1 year ago
0
Pyramidal OMETIFF does not show histogram in OMERO iviewer
#188
snehashis-roy
closed
1 year ago
1
conversion fails midway through big h5 file
#187
will-moore
closed
1 year ago
9
Update readme with a few more options, including `--log-level`
#186
melissalinkert
closed
1 year ago
0
Add --debug flag to README.md
#185
will-moore
closed
1 year ago
0
ND2 to OMETIFF conversion error
#184
snehashis-roy
closed
1 year ago
3
Add some cautionary statements about adjusting tile sizes
#183
melissalinkert
closed
1 year ago
0
Could not initialize class org.blosc.IBloscDll
#182
wearebk
closed
1 year ago
1
Fix dataset paths when `--scale-format-string` is used
#181
melissalinkert
closed
1 year ago
0
Convert to yx or cyx
#180
LucaMarconato
opened
1 year ago
3
Can't remove series from directory structure with `--scale-format-string`
#179
LucaMarconato
closed
1 year ago
4
Bump Bio-Formats to version 6.11.1
#178
sbesson
closed
1 year ago
0
Pyramid TIFF: ignore files where the first/last IFDs have different pixel types
#177
melissalinkert
closed
1 year ago
1
Support for Google Cloud Storage
#176
perlman
opened
1 year ago
9
Cannot convert svs to ome-tiff
#175
gsakkis
closed
7 months ago
4
Update to Bio-Formats 6.11.0
#174
melissalinkert
closed
1 year ago
0
Remove the "--pixel-type" option
#173
melissalinkert
closed
1 year ago
1
Add progress API
#172
melissalinkert
closed
1 year ago
1
Set default channel color to grey for single channel images
#171
melissalinkert
closed
1 year ago
0
Color metadata & single-channel use case
#170
sbesson
closed
1 year ago
0
Remove logback.xml from jar
#169
melissalinkert
closed
1 year ago
8
Don't package logback.xml in bioformats2raw*.jar
#168
melissalinkert
closed
1 year ago
0
Explicitly declare logback as library dependencies
#167
sbesson
closed
1 year ago
0
Readme: add links and references to OME-NGFF 0.4.1 specification
#166
sbesson
closed
1 year ago
0
Update README.md
#165
joshua-gould
closed
2 years ago
1
ZipStore as an output option
#164
prete
opened
2 years ago
1
The term 'bioformats2raw' is not recognized as a name of a cmdlet
#163
AmmarAmmer
closed
2 years ago
1
Update Bio-Formats to 6.10.1
#162
melissalinkert
closed
2 years ago
0
OME/METADATA.ome.xml for Plate doesn't use
#161
will-moore
closed
2 years ago
5
Add optional OMERO rendering metadata
#160
melissalinkert
closed
2 years ago
10
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