globalbioticinteractions nomer issues

globalbioticinteractions / nomer

maps identifiers and names to other identifiers and names

GNU General Public License v3.0

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issues

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suspected flipped synonym relation for discoverlife-taxon matcher [Agapostemon taxanus] synonymOf [Agapostemon cyanozonus]

#45 jhpoelen closed 3 years ago
3
warnings generated when matching against discoverlife-taxon

#44 jhpoelen closed 2 years ago
19
Create a way for nomer to export an entire taxonomy (e.g., ITIS, DiscoverLife)

#43 seltmann closed 3 years ago
15
Add DiscoverLife Bees to Nomer

#42 seltmann closed 3 years ago
9
first pass at improving/introducing on-/offline GBIF backbone id/name matching

#41 jhpoelen closed 3 years ago
0
support offline GBIF backbone matcher

#40 jhpoelen closed 3 years ago
3
Fix exception when ranks is null

#39 zedomel closed 3 years ago
3
Bump commons-compress from 1.20 to 1.21 in /nomer-taxon-resolver

#38 dependabot[bot] closed 3 years ago
0
Bump commons-compress from 1.19 to 1.21 in /nomer

#37 dependabot[bot] closed 3 years ago
0
failing OpenBiodiv regression tests

#36 jhpoelen closed 2 years ago
4
add support for using [path.kingdom.name] as column type in output schema

#35 jhpoelen closed 3 years ago
6
Update nomer install command

#34 zedomel closed 3 years ago
1
add methods to interpret names like "Trifolium.pratense" -> "Trifolium pratense"

#33 jhpoelen closed 3 years ago
1
Name matching against NCBI Taxonomy

#32 nleguillarme closed 3 years ago
5
Lucene lock obtain timed out exception

#31 nleguillarme closed 3 years ago
8
add support for linking taxon ids to open tree of life taxon identifiers

#30 jhpoelen closed 2 years ago
2
Looking for URI in NCBI but nomer append returns URI in EOL

#29 nleguillarme closed 3 years ago
1
openbiodiv sparql endpoint unavailable

#28 jhpoelen closed 3 years ago
2
add support for common name matching

#27 jhpoelen closed 3 years ago
9
Download the taxon map/cache manually

#26 nleguillarme closed 3 years ago
2
Bump junit from 4.12 to 4.13.1 in /nomer-parent

#25 dependabot[bot] closed 4 years ago
0
add support to resolve OpenBiodiv taxon names

#24 jhpoelen closed 4 years ago
2
add support for linking names to Plazi-enabled taxonomic literature.

#23 jhpoelen closed 4 years ago
9
Get taxon ID in target taxonomy

#22 nleguillarme closed 4 years ago
12
support ITIS prefix https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=535920

#21 jhpoelen closed 4 years ago
1
suspicious (non-) resolving of GBIF synonym Baeria https://www.gbif.org/species/6064919

#20 jhpoelen closed 4 years ago
3
unexpected error when using two nomer processes with one cache directory

#19 jhpoelen closed 4 years ago
1
support offline ITIS taxon matching

#18 jhpoelen closed 4 years ago
1
support offline NCBI taxon matching

#17 jhpoelen closed 4 years ago
2
known ITIS id [ITIS:168823] fails to be resolved via https://www.itis.gov:443/ITISWebService/services/ITISService/getAcceptedNamesFromTSN?tsn=168823

#16 jhpoelen closed 4 years ago
1
Matching EOL taxon ids from interactions.tsv returns None

#15 nleguillarme closed 4 years ago
9
Issue using GloBI's Taxon Graph to lookup terms by id

#14 nleguillarme closed 5 years ago
11
"acacia_abyssinica" corrected to "acacia abyssinica" not "Acacia abyssinica"

#13 jhpoelen closed 5 years ago
1
Unspecified Scombridae corrected to empty string

#12 jhpoelen closed 5 years ago
1
support offline enabled EOL Taxon matching

#11 jhpoelen closed 4 years ago
17
term id "9606" matches NCBI:9606 using globi-cache with default settings

#10 jhpoelen closed 5 years ago
2
populate name source information to allow for name provenance

#9 jhpoelen opened 6 years ago
0
taxon map / cache validation

#8 jhpoelen closed 6 years ago
2
Alternative table layout / views from taxonCache

#7 cboettig opened 6 years ago
15
ALA matched taxon terms lack namespace .

#6 jhpoelen closed 6 years ago
1
Parsing issues with nomer tsv records?

#5 cboettig opened 6 years ago
26
nomer data

#4 cboettig opened 6 years ago
18
build error

#3 jhpoelen closed 6 years ago
3
provide example of mapping GRIN descriptors to Trait Ontology

#2 jhpoelen closed 6 years ago
2
allow schema definition for terms and term maps

#1 jhpoelen closed 4 years ago
1