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ensemblemerge
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Add DDRTree for trajectory inference / dimension reduction for scRNA-seq
#64
gongx030
opened
1 year ago
0
Build a docker image for ensemblemerge
#63
gongx030
opened
1 year ago
0
Build an ensemblemerge conda package
#62
gongx030
closed
1 year ago
3
Add k-NN overlap to compare different normalization methods
#61
XiaoMa55555
closed
1 year ago
4
Delete line 625 in merge.r
#60
XiaoMa55555
closed
1 year ago
0
Kmeans clustering add feature to define cell embeddings
#59
dsouz072
opened
2 years ago
0
Saving corrected counts data from scVI Issue #55
#58
dsouz072
closed
2 years ago
2
Add additional parameters to KMeans cluster Issue #53
#57
dsouz072
closed
2 years ago
0
Depth based normalization
#56
gongx030
opened
2 years ago
0
Denovo Integration - Saving corrected counts data while using scVI merge
#55
dsouz072
closed
2 years ago
6
Supporting diffusion pseudotime for dimension reduction
#54
gongx030
opened
2 years ago
1
Update additional parameters in KMeans cluster
#53
dsouz072
closed
2 years ago
1
Add KMeans cluster Issue #50
#52
dsouz072
closed
2 years ago
0
scVI error with v2.1.23-001
#51
dsouz072
closed
2 years ago
4
Add K-means clustering
#50
dsouz072
closed
2 years ago
3
Add CIDER for clustering
#49
gongx030
opened
2 years ago
0
Unable to open notebooks in ReadMe table
#48
dsouz072
closed
2 years ago
2
Add MARS for de novo integration
#47
gongx030
opened
2 years ago
1
Add scArches for reference-based mapping
#46
gongx030
closed
2 years ago
0
BBKNN error on colab
#45
gongx030
opened
2 years ago
2
scvi import error on colab
#44
gongx030
closed
2 years ago
1
Add Seurat for DE analysis
#43
gongx030
closed
2 years ago
0
Add scran's devolution strategy for normalization
#42
gongx030
closed
2 years ago
0
Add Seurat for reference based mapping
#41
gongx030
closed
2 years ago
0
Error while running ensemble merge using 'SeuratMerge'
#40
dsouz072
closed
2 years ago
1
Implement an active assay slot for classes
#39
gongx030
closed
2 years ago
0
Release of ensemblemerge v2.1.18
#38
gongx030
opened
2 years ago
3
Add SoupX for doublet detection
#37
gongx030
closed
2 years ago
0
Add Scrublet for doublet detection
#36
gongx030
closed
2 years ago
0
Add DecontX for removing ambient RNAs
#35
gongx030
closed
2 years ago
0
Make `BaseMerge` inheirts `BaseEmbed`
#34
gongx030
closed
2 years ago
0
Remove notebook dir
#33
gongx030
closed
2 years ago
2
Error while running PCAEmbed
#32
dsouz072
closed
2 years ago
2
Add class `UMAPEmbed' for UMAP embedding
#31
gongx030
closed
2 years ago
0
Error in Preprocess
#30
dsouz072
closed
2 years ago
3
A simple scRNA-seq analysis pipeline
#29
gongx030
closed
2 years ago
1
Installing github on Colab
#28
dsouz072
closed
2 years ago
4
Add a `BaseNormalize` class and add support for sctransform
#27
gongx030
closed
2 years ago
2
Add DoubletFinder for doublet detection
#26
gongx030
closed
2 years ago
0
Add scDblFinder for doublet detection
#25
gongx030
closed
2 years ago
0
Add clustifyr for expression profile based annotation
#24
gongx030
opened
2 years ago
0
Add OnClass for annotation
#23
gongx030
opened
2 years ago
0
Add scPred for annotation
#22
gongx030
opened
2 years ago
0
Add Garnett for annotation
#21
gongx030
opened
2 years ago
0
Add SingleCellNet for annotation
#20
gongx030
opened
2 years ago
0
Add classifyr for gene marker based annotation
#19
gongx030
closed
2 years ago
0
Add scMatch for annotation
#18
gongx030
opened
2 years ago
0
Add CHETAH for annotation
#17
gongx030
opened
2 years ago
0
Add SCSA for annotation
#16
gongx030
opened
2 years ago
0
Add SingleR for annotation
#15
gongx030
opened
2 years ago
0
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