google-deepmind alphafold3 issues

google-deepmind / alphafold3

AlphaFold 3 inference pipeline.

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issues

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Failed to build installable wheels for some pyproject.toml based projects

#106 jianguf opened 11 minutes ago
0
Compilation time of the model

#105 smg3d opened 26 minutes ago
0
Is it necessary to continuously update the database?

#104 junjunbear closed 2 hours ago
1
Split the databases?

#103 stianale closed 2 hours ago
2
With multiple ligand copies (SMILES), sometimes get "Failed to construct RDKit reference structure"

#102 smg3d opened 18 hours ago
0
test run failed

#101 xuewuzhang-UTSW closed 14 hours ago
2
fix type casting error in Apple Clang

#100 YoshitakaMo opened 18 hours ago
1
Typo in userCCD key in full example

#99 georgkempf closed 19 hours ago
2
Visualization for AlphaFold3 Results

#98 Hanziwww closed 19 hours ago
3
AF3 with template free setting is still searching template

#97 zzhangzzhang closed 19 hours ago
1
Struggle with obtaining model weights

#96 stianale closed 22 hours ago
1
PDB TO JSON

#95 darkcorvushhh closed 22 hours ago
5
Can I add new PDB templates

#94 rajanprabu closed 1 day ago
1
docker run error: Importing the numpy C-extensions failed.

#93 carrisonj closed 1 day ago
2
Get https:/registry-1.docker io/v2/: net/http: request canceled while waiting for comection (Client.Timeout exceeded while awaiting headers)

#91 hello257 closed 2 hours ago
4
ValueError: implementation='triton' is unsupported on this GPU generation.

#90 jxwangxl closed 2 hours ago
3
models folder for run_alphafold.py

#89 soumadwip closed 21 hours ago
4
bug: pdb_2022_09_28_mmcif_files.tar replacement with mmcif_files

#88 hegelab opened 1 day ago
7
I can't get weight

#87 xztJLAU closed 1 day ago
4
predict same structure with different random seed

#86 InvincibleZZH closed 1 day ago
4
split stages into cpu and gpu

#85 rukibuki closed 2 days ago
4
RuntimeWarning: invalid value encountered in divide

#84 Maikuraky closed 1 day ago
1
docker build succeed, but docker run failed

#83 carrisonj opened 2 days ago
7
Alphafold3 docker container can't use GPU A100

#82 xiongzhiqiang closed 2 days ago
1
Singularity and CUDNN

#79 danielsj1-chop closed 1 day ago
7
cmake/pip local build

#77 OH-AU closed 1 day ago
2
Different versions of rdkit seem to have a significant impact?

#76 jiaweiguan closed 3 days ago
1
Running with Singularity

#75 almeida85 closed 2 days ago
3
Residue numbering start specification

#74 lucajovine opened 3 days ago
0
Could you kindly provide an example of the input file?

#73 JiaTR0626 closed 3 days ago
2
Fix final singularity command in `installation.md`

#72 amorehead closed 2 days ago
1
How to get single and pair representation?

#71 Mochimo-mo closed 3 days ago
1
Is there a way to get per-residue embeddings from the model?

#70 GUMI-QXP opened 4 days ago
1
question about the training data of the released model

#69 LiuJunhong closed 3 days ago
2
ERROR: fatal : Unsupported .version 8.4; current version is '8.3'

#68 XIANZHE-LI closed 1 day ago
10
Empty MSA

#67 tony9664 closed 20 hours ago
8
How to do multimer prediction? like protein-protein, protein-rna?

#66 wenhuihuang19791109 closed 4 days ago
2
Invalid division observed in computing confidence scores

#65 amorehead closed 3 days ago
3
Can AlphaFold3 predict extremely large complexes using multiple GPUs?

#64 CongLabCode closed 4 days ago
2
Getting the scores (plddt, pae)

#63 vecos1990 closed 4 days ago
3
MemoryError - jackhammer

#62 hegelab closed 2 days ago
4
How to make input json file can predict protein-protein(rna/dna) interaction

#61 wenhuihuang19791109 closed 6 days ago
1
corrupted weights are dumped in the output

#60 aozalevsky closed 3 days ago
3
Model does not run correctly on non A100/H100 GPUs

#59 joshabramson opened 6 days ago
13
Were all water molecules discarded before AF3 training?

#58 smg3d closed 6 days ago
1
Getting nonsense predictions

#57 georgkempf closed 4 days ago
2
Question: any precomputed hmmer msa database?

#56 sky1ove closed 3 days ago
5
rasa calculation failed

#55 vecos1990 opened 6 days ago
1
Question about Post-Translational Modifications (PTMs) in Protein Prediction

#54 wtni-gidle opened 6 days ago
3
Question about inference speed on H100 GPU

#53 yunhzou closed 4 days ago
2