googlegenomics pipelines-api-examples issues

googlegenomics / pipelines-api-examples

Examples for the Google Genomics Pipelines API.

BSD 3-Clause "New" or "Revised" License

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issues

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genomics API spuriously creating VM instances

#74 njbernstein opened 4 years ago
0
How to deal with output directories

#73 Gibbsdavidl opened 4 years ago
2
E: Package 'docker.io' has no installation candidate

#72 wenweiliang opened 6 years ago
3
Update wdl_runner/README.md to point to Cromwell on Google in the OpenWDL repo

#71 mbookman closed 6 years ago
1
Docker installation issue in VMs

#70 slagelwa opened 6 years ago
0
Fixes the input recursive argument

#69 slagelwa closed 6 years ago
4
link in section (3) of README is broken

#68 smrgit closed 6 years ago
4
Change pipelines-api-examples license to BSD (from Apache 2)

#67 mbookman closed 7 years ago
1
wdl_runner: Update to Cromwell 27

#66 mbookman closed 7 years ago
1
Handle organization project IDs in imageName

#65 eap closed 7 years ago
0
Change the samtools and fastqc test bam path to use an http URL instead of ftp

#64 mbookman closed 7 years ago
1
Remove test for obsolete wdl_pipeline_from_git.

#63 mbookman closed 7 years ago
0
wdl_runner: increase default memory requirement

#62 mbookman closed 7 years ago
0
update version of Rabix in cwl_runner; also Rabix option does not work

#61 smrgit opened 7 years ago
4
Updates to Jes template conf for Cromwell v24

#60 ruchim closed 7 years ago
2
Update Cromwell version

#59 ruchim closed 7 years ago
4
Update Cromwell Version

#58 ruchim closed 7 years ago
1
Specify heap space parameters in Cromwell command

#57 mbookman closed 7 years ago
0
Specify heap space parameters in Cromwell command

#56 vdauwera closed 7 years ago
1
Update cwl_runner.sh stdout/stderr

#55 jbingham closed 7 years ago
0
Increasing java heap space in cromwell driver

#54 vdauwera closed 7 years ago
9
Enable multiple inputs JSONs

#53 vdauwera closed 6 years ago
1
Fix formatting of ordered list in README.md

#52 jbingham closed 7 years ago
0
Enable WDL imports

#51 vdauwera closed 6 years ago
5
Upgrade wdl_runner to use Cromwell version 24.

#50 mbookman closed 7 years ago
2
test_index.sh error with "curl" command

#49 smrgit closed 7 years ago
1
Cromwell 0.24

#48 CarlosBorroto closed 7 years ago
5
Merge pull request #1 from googlegenomics/master

#47 jbingham closed 7 years ago
0
Remove unused variable. Remove quotes.

#46 jbingham closed 7 years ago
0
CWL runner example

#45 jbingham closed 7 years ago
3
wdl_runner: use Broad-published version of the Docker image.

#44 mbookman closed 7 years ago
3
wdl_runner: git install needs to be retried.

#43 mbookman closed 7 years ago
1
Revert "wdl_runner: install of git needs to be retried"

#42 mbookman closed 7 years ago
0
wdl_runner: install of git needs to be retried

#41 mbookman closed 7 years ago
1
monitor_wdl_pipeline.sh - fix readlink incompatibility on MacOS.

#40 mbookman closed 7 years ago
1
wdl_runner: monitor, tests, latest Cromwell release

#39 mbookman closed 7 years ago
1
wdl_runner: updates for master node resources and reproducible pipelines. …

#38 mbookman closed 7 years ago
1
Update poll.sh to support more "brief" output options

#37 mbookman closed 7 years ago
2
wdl_runner: Add retries to setup.sh (used by wdl_pipeline_from_git.yaml)

#36 mbookman closed 7 years ago
1
What infrastructure is in place for handling dependencies between pipelines?

#35 seandavi opened 7 years ago
8
Add retries when polling Cromwell for job status.

#34 mbookman closed 7 years ago
1
Fix wdl_runner small typos. Add fast fail for setup.sh.

#33 mbookman closed 7 years ago
4
Add wdl_runner pipeline example.

#32 mbookman closed 7 years ago
4
Adds new zones announced today: us-west1-a us-west1-b

#31 mbookman closed 7 years ago
1
Remove stray "ls" in the poll.sh. Make the usage check more precise.

#30 mbookman closed 8 years ago
3
When called without arguments, the usage instructions are returned

#29 tomsing1 closed 8 years ago
4
poll.sh helper script doesn't accept polling time argument

#28 tomsing1 closed 7 years ago
4
Add example of using gcloud to run the samtools pipeline

#27 mbookman closed 8 years ago
3
Have all examples say to do Prerequisites

#26 melissachang opened 8 years ago
0
Update instructions to use virtualenv

#25 melissachang opened 8 years ago
0