greenelab BioBombe issues

greenelab / BioBombe

BioBombe: Sequentially compressed gene expression features enhances biological signatures

https://greenelab.github.io/BioBombe/

BSD 3-Clause "New" or "Revised" License

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issues

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Chioma ran module 0 for Target

#197 rando2 closed 3 months ago
1
Testing bio bombe vscode

#196 Chioma-Opara closed 4 months ago
2
where is model?

#195 wenyuhaokikika opened 1 year ago
0
build conda environment

#194 Mingjiang-git opened 2 years ago
4
Update analysis-pipeline.sh

#193 AshirBorah closed 3 years ago
3
Reference GB Paper

#192 cgreene closed 4 years ago
0
Increasing resolution on primary figures for publication

#191 gwaybio closed 4 years ago
0
Update Citation to Genome Biology

#190 gwaybio closed 4 years ago
0
Adding Vince and Updating Citation Info

#189 gwaybio closed 4 years ago
4
Adding Simulation Experiment - Importance of Compression Feature Number

#188 gwaybio closed 4 years ago
3
Rerun Signature Module with All TARGET samples

#187 gwaybio closed 5 years ago
0
Adding Unequal Variance to Signature Analysis T-Test

#186 gwaybio closed 5 years ago
0
Adding Algorithm and Latent Dimensionality Execution Time analysis

#185 gwaybio closed 5 years ago
1
Updating Gene Signature Module (module 10) in Response to Reviewer Comments

#184 gwaybio closed 5 years ago
0
Updating Logo and Description in README

#183 gwaybio closed 5 years ago
0
Add Vince as an Author

#182 gwaybio closed 4 years ago
0
make landing page for paper

#181 vincerubinetti closed 5 years ago
0
fix typo in link

#180 gwaybio closed 5 years ago
0
hotfix gene expr sig readme

#179 gwaybio closed 5 years ago
0
Update Documentation and Module 10

#178 gwaybio closed 5 years ago
1
[Data Only] Adding in Results that I didn't add before

#177 gwaybio closed 5 years ago
0
Updating TCGA Figure - Adjusted weight absolute sum

#176 gwaybio closed 5 years ago
1
Splitting Supplementary Figure Off GTEx Figure

#175 gwaybio closed 5 years ago
1
Updating Axis Labels and Points in Supplementary Fig (top rank)

#174 gwaybio closed 5 years ago
1
Adding NBL Cell Line T-Test Results

#173 gwaybio closed 5 years ago
1
Add t-test for NBL Cell lines in MYCN amplification signature application

#172 gwaybio closed 5 years ago
0
Update TCGA Ensemble Model Coefficient Figure (panel h)

#171 gwaybio closed 5 years ago
0
Split GTEx Figure G and H into New Supplementary Figure

#170 gwaybio closed 5 years ago
0
Change y axis label for Feature Rank Plot

#169 gwaybio closed 5 years ago
1
Generate Supplementary Figure Describing GTEx and TCGA Sex Features

#168 gwaybio closed 5 years ago
2
Updating Coefficient Interpretation to All Feature Ensemble

#167 gwaybio closed 5 years ago
1
Updating Coverage Figure

#166 gwaybio closed 5 years ago
2
Validate MYCN status in NBL Cell Lines

#165 gwaybio closed 5 years ago
1
Find Sex Feature in TCGA

#164 gwaybio closed 5 years ago
1
Adding Separation Analysis Module

#163 gwaybio closed 5 years ago
4
Adding Ensemble Classification Analysis

#162 gwaybio closed 5 years ago
1
Updating GTEx Main Figure - Visualizing mean separation in neutrophil and monocyte external data

#161 gwaybio closed 5 years ago
0
Also, see what happens for all feature predictions on TCGA cancer type and mutation

#160 gwaybio closed 5 years ago
0
Add Ensemble Analysis to TCGA FIgure

#159 gwaybio closed 5 years ago
0
Move E and F of GTEx Figure to Supplement

#158 gwaybio closed 5 years ago
0
Missing x axis label in main coverage figure

#157 gwaybio closed 5 years ago
0
Plotting Mean Delta AUROC

#156 gwaybio closed 5 years ago
0
Updates to Extract Top Neutrophil and Monocyte Feature Scores across External Datasets

#155 gwaybio closed 5 years ago
1
Plot Change in AUC

#154 gwaybio closed 5 years ago
1
Additional Analysis: Applications to External Datasets

#153 gwaybio closed 5 years ago
1
Adding Zenodo DOI

#152 gwaybio closed 5 years ago
0
Update Analysis Pipeline

#151 gwaybio closed 5 years ago
0
Renaming Module 6

#150 gwaybio closed 5 years ago
1
Update panels in coverage figure

#149 gwaybio closed 5 years ago
0
Rename Module 6 to `6.biobombe-projection`

#148 gwaybio closed 5 years ago
0