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greenelab
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BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
https://greenelab.github.io/BioBombe/
BSD 3-Clause "New" or "Revised" License
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Chioma ran module 0 for Target
#197
rando2
closed
3 months ago
1
Testing bio bombe vscode
#196
Chioma-Opara
closed
4 months ago
2
where is model?
#195
wenyuhaokikika
opened
1 year ago
0
build conda environment
#194
Mingjiang-git
opened
2 years ago
4
Update analysis-pipeline.sh
#193
AshirBorah
closed
3 years ago
3
Reference GB Paper
#192
cgreene
closed
4 years ago
0
Increasing resolution on primary figures for publication
#191
gwaybio
closed
4 years ago
0
Update Citation to Genome Biology
#190
gwaybio
closed
4 years ago
0
Adding Vince and Updating Citation Info
#189
gwaybio
closed
4 years ago
4
Adding Simulation Experiment - Importance of Compression Feature Number
#188
gwaybio
closed
4 years ago
3
Rerun Signature Module with All TARGET samples
#187
gwaybio
closed
5 years ago
0
Adding Unequal Variance to Signature Analysis T-Test
#186
gwaybio
closed
5 years ago
0
Adding Algorithm and Latent Dimensionality Execution Time analysis
#185
gwaybio
closed
5 years ago
1
Updating Gene Signature Module (module 10) in Response to Reviewer Comments
#184
gwaybio
closed
5 years ago
0
Updating Logo and Description in README
#183
gwaybio
closed
5 years ago
0
Add Vince as an Author
#182
gwaybio
closed
4 years ago
0
make landing page for paper
#181
vincerubinetti
closed
5 years ago
0
fix typo in link
#180
gwaybio
closed
5 years ago
0
hotfix gene expr sig readme
#179
gwaybio
closed
5 years ago
0
Update Documentation and Module 10
#178
gwaybio
closed
5 years ago
1
[Data Only] Adding in Results that I didn't add before
#177
gwaybio
closed
5 years ago
0
Updating TCGA Figure - Adjusted weight absolute sum
#176
gwaybio
closed
5 years ago
1
Splitting Supplementary Figure Off GTEx Figure
#175
gwaybio
closed
5 years ago
1
Updating Axis Labels and Points in Supplementary Fig (top rank)
#174
gwaybio
closed
5 years ago
1
Adding NBL Cell Line T-Test Results
#173
gwaybio
closed
5 years ago
1
Add t-test for NBL Cell lines in MYCN amplification signature application
#172
gwaybio
closed
5 years ago
0
Update TCGA Ensemble Model Coefficient Figure (panel h)
#171
gwaybio
closed
5 years ago
0
Split GTEx Figure G and H into New Supplementary Figure
#170
gwaybio
closed
5 years ago
0
Change y axis label for Feature Rank Plot
#169
gwaybio
closed
5 years ago
1
Generate Supplementary Figure Describing GTEx and TCGA Sex Features
#168
gwaybio
closed
5 years ago
2
Updating Coefficient Interpretation to All Feature Ensemble
#167
gwaybio
closed
5 years ago
1
Updating Coverage Figure
#166
gwaybio
closed
5 years ago
2
Validate MYCN status in NBL Cell Lines
#165
gwaybio
closed
5 years ago
1
Find Sex Feature in TCGA
#164
gwaybio
closed
5 years ago
1
Adding Separation Analysis Module
#163
gwaybio
closed
5 years ago
4
Adding Ensemble Classification Analysis
#162
gwaybio
closed
5 years ago
1
Updating GTEx Main Figure - Visualizing mean separation in neutrophil and monocyte external data
#161
gwaybio
closed
5 years ago
0
Also, see what happens for all feature predictions on TCGA cancer type and mutation
#160
gwaybio
closed
5 years ago
0
Add Ensemble Analysis to TCGA FIgure
#159
gwaybio
closed
5 years ago
0
Move E and F of GTEx Figure to Supplement
#158
gwaybio
closed
5 years ago
0
Missing x axis label in main coverage figure
#157
gwaybio
closed
5 years ago
0
Plotting Mean Delta AUROC
#156
gwaybio
closed
5 years ago
0
Updates to Extract Top Neutrophil and Monocyte Feature Scores across External Datasets
#155
gwaybio
closed
5 years ago
1
Plot Change in AUC
#154
gwaybio
closed
5 years ago
1
Additional Analysis: Applications to External Datasets
#153
gwaybio
closed
5 years ago
1
Adding Zenodo DOI
#152
gwaybio
closed
5 years ago
0
Update Analysis Pipeline
#151
gwaybio
closed
5 years ago
0
Renaming Module 6
#150
gwaybio
closed
5 years ago
1
Update panels in coverage figure
#149
gwaybio
closed
5 years ago
0
Rename Module 6 to `6.biobombe-projection`
#148
gwaybio
closed
5 years ago
0
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