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greenelab
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tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
BSD 3-Clause "New" or "Revised" License
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Push To Master: VAE
#56
gwaybio
closed
7 years ago
4
Push To Master: Add git lfs Data
#55
gwaybio
closed
7 years ago
0
Push To Master: Add data management scripts
#54
gwaybio
closed
7 years ago
3
Push To Master: Parameter Sweep visualization
#53
gwaybio
closed
7 years ago
2
Push To Master: Add parameter sweep results
#52
gwaybio
closed
7 years ago
1
Push to Master: Parameter Sweep Scripts
#51
gwaybio
closed
7 years ago
1
Push To Master: License
#50
gwaybio
closed
7 years ago
0
Begin merge into master - README and git files
#49
gwaybio
closed
7 years ago
1
Adding emoji to README
#48
gwaybio
closed
7 years ago
4
Update pipeline
#47
gwaybio
closed
7 years ago
0
Tybalt init
#46
gwaybio
closed
7 years ago
0
Add HGSC latent space analysis
#45
gwaybio
closed
7 years ago
0
add doi badge to readme
#44
gwaybio
closed
7 years ago
0
Update figures
#43
gwaybio
closed
7 years ago
0
Minor hotfix
#42
gwaybio
closed
7 years ago
0
Final pipeline initialization
#41
gwaybio
closed
7 years ago
0
Prep for pipeline beginning
#40
gwaybio
closed
7 years ago
0
Adding sample activation, gene weights viz, and parameter sweep updates
#39
gwaybio
closed
7 years ago
0
Adding TSNE analysis
#38
gwaybio
closed
7 years ago
0
Update clinical data and processing
#37
gwaybio
closed
7 years ago
0
Update model 50 epoch
#36
gwaybio
closed
7 years ago
0
Update Distance analysis to TP53
#35
gwaybio
closed
7 years ago
0
Distance analysis
#34
gwaybio
closed
7 years ago
0
Remove center attempt
#33
gwaybio
closed
7 years ago
0
Add parameter sweep markdown
#32
gwaybio
closed
7 years ago
0
add param sweep figures
#31
gwaybio
closed
7 years ago
0
add pmacs cluster env
#30
gwaybio
closed
7 years ago
0
Update readme
#29
gwaybio
closed
7 years ago
0
Update notebook to optimal params
#28
gwaybio
closed
7 years ago
0
Add Kappa to parameter sweep
#27
gwaybio
closed
7 years ago
0
adding processed data to git lfs
#26
gwaybio
closed
7 years ago
0
Training example model with test output
#25
gwaybio
closed
7 years ago
0
logging folder
#24
gwaybio
closed
6 years ago
1
Update python path and correct read_table
#23
gwaybio
closed
7 years ago
0
aupdate path for param_sweep;
#22
gwaybio
closed
7 years ago
0
update paramsweep helper script
#21
gwaybio
closed
7 years ago
0
Paramsweep test
#20
gwaybio
closed
7 years ago
0
update docstring of bsub help
#19
gwaybio
closed
7 years ago
0
Param sweep hotfix
#18
gwaybio
closed
7 years ago
0
write scripts/vae_pancancer.py
#17
gwaybio
closed
7 years ago
0
parameter sweep logic
#16
gwaybio
closed
7 years ago
0
Parameter Sweep
#15
gwaybio
closed
7 years ago
0
Updating model to trained VAE
#14
gwaybio
closed
7 years ago
0
Save recon_loss and KL_loss separately to visualize tradeoff
#13
gwaybio
closed
6 years ago
1
Implement Warmup
#12
gwaybio
closed
7 years ago
1
Initializing Git LFS
#11
gwaybio
closed
7 years ago
0
fix vae training to save full training history
#10
gwaybio
closed
7 years ago
0
Define conda environment to work in GPU cluster
#9
gwaybio
closed
7 years ago
0
Bug in Training VAE
#8
gwaybio
closed
7 years ago
1
Switch to Git LFS
#7
gwaybio
closed
7 years ago
1
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