issues
search
greenelab
/
tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
BSD 3-Clause "New" or "Revised" License
162
stars
62
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Keras versioning error
#106
ajlee21
closed
6 years ago
3
Adding Conditional Tybalt Model
#105
gwaybio
closed
6 years ago
3
Simulation Experiments
#104
gwaybio
closed
6 years ago
2
add scripts to simulate data
#103
gwaybio
closed
6 years ago
6
Refactoring Tybalt Class - Adding BaseModel and Adage classes
#102
gwaybio
closed
6 years ago
1
Adding MSE as loss option to tybalt model class
#101
gwaybio
closed
6 years ago
0
Add note to README about MAD genes
#100
gwaybio
closed
6 years ago
1
MAD: mean or median?
#99
enricoferrero
closed
6 years ago
2
Adding Tybalt Class
#98
gwaybio
closed
6 years ago
0
Top n - High Weight Selection Method
#97
gwaybio
closed
6 years ago
1
High Weigh Genes Outliers
#96
gwaybio
closed
6 years ago
1
Adding High Weight Gene Analysis
#95
gwaybio
closed
6 years ago
2
Update ADAGE model path
#94
gwaybio
closed
6 years ago
0
Updating how ADAGE weights are saved
#93
gwaybio
closed
6 years ago
0
Latent Space Evaluations: Interpolation
#92
gwaybio
closed
6 years ago
1
Latent Space Evaluations: Arithmetic
#91
gwaybio
closed
6 years ago
1
Pathway Coverage Evaluation
#90
gwaybio
closed
6 years ago
3
Add reconstruction based analysis
#89
gwaybio
closed
6 years ago
1
Add stale .yml
#88
gwaybio
closed
6 years ago
0
Assess per Cancer-Type reconstruction cost
#87
gwaybio
closed
6 years ago
1
Establish naming convention for latent features
#86
gwaybio
opened
6 years ago
0
ADAGE gene weights
#85
gwaybio
closed
6 years ago
1
Latent feature comparison (Part II)
#84
gwaybio
closed
6 years ago
0
Latent feature comparison (Part I)
#83
gwaybio
closed
6 years ago
2
Adding full status matrix
#82
gwaybio
closed
6 years ago
0
Add Two Hidden Layer Model
#81
gwaybio
closed
6 years ago
0
Replacing flat files with compression
#80
gwaybio
closed
6 years ago
0
Merge Clean Update
#79
gwaybio
closed
6 years ago
0
Compressing git LFS files
#78
gwaybio
closed
6 years ago
0
Add Parameter Sweep Figures and Logic from 300 feature model
#77
gwaybio
closed
6 years ago
0
300 feature hidden layer parameter sweep
#76
gwaybio
closed
6 years ago
0
Adding Mutation Burden Data
#75
gwaybio
closed
6 years ago
1
Refactoring Tybalt VAE Code
#74
gwaybio
closed
6 years ago
1
Add genes in model as text file
#73
gwaybio
closed
6 years ago
1
Adding Two Layer Parameter Sweep Figures
#72
gwaybio
closed
6 years ago
1
Adding Parameter Sweep for Two Hidden Layer Model / Reorganizing nbconverted Scripts
#71
gwaybio
closed
6 years ago
9
Add Mutation Data
#70
gwaybio
closed
6 years ago
0
Extract High Weight Genes for All Features
#69
gwaybio
closed
6 years ago
1
Add Pathway Analysis Script
#68
gwaybio
closed
6 years ago
1
Methods threshold to 2.5 std dev
#67
gwaybio
closed
6 years ago
2
Push To Master: Extract weight matrix
#66
gwaybio
closed
6 years ago
1
Push To Master: Feature activation examples for Paper Figures
#65
gwaybio
closed
6 years ago
2
Output Gene Weight Matrix
#64
gwaybio
closed
6 years ago
0
Push To Master: HGSC latent feature arithmetic
#63
gwaybio
closed
6 years ago
7
Push to Master: add sample activation plotting script
#62
gwaybio
closed
6 years ago
0
Push to Master: Add Preprint Info in README
#61
gwaybio
closed
6 years ago
0
t-SNE activation plots
#60
gwaybio
closed
6 years ago
1
Push To Master: Add Optimal ADAGE training
#59
gwaybio
closed
6 years ago
0
Incorporate ADAGE model parameter sweep
#58
gwaybio
closed
6 years ago
12
Separate Diagnostic Notebook
#57
gwaybio
closed
6 years ago
2
Previous
Next