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griffithlab
/
civicpy
A python interface for the CIViC db application
MIT License
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5
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refactor object retrieval from cache
#48
ahwagner
opened
5 years ago
0
evidence and variants filter out assertions based on include_filter
#47
ahwagner
closed
5 years ago
0
add revision retrieval method to CivicRecord
#46
ahwagner
closed
4 years ago
1
add variant_group support
#45
ahwagner
closed
4 years ago
0
Update the VCFWriter to handle indels
#44
susannasiebert
closed
5 years ago
0
revise filter name to include_status
#43
ahwagner
closed
5 years ago
0
Refactor vcf exports using a maintained vcf library
#42
ahwagner
opened
5 years ago
0
Status filters
#41
ahwagner
closed
5 years ago
2
Update docs to use basicstrap theme
#40
susannasiebert
closed
5 years ago
0
Update CSQ field names and order to better reflect official annotation guidelines
#39
susannasiebert
closed
5 years ago
1
implement intermediate search strategies
#38
ahwagner
closed
5 years ago
0
Make cache timeout configurable via env variable CIVICPY_CACHE_TIMEOUT_DAYS
#37
susannasiebert
closed
5 years ago
0
Make cache timeout configurable by env variable
#36
ahwagner
closed
5 years ago
0
Version
#35
ahwagner
closed
5 years ago
0
Fix help text for update_chache function
#34
susannasiebert
closed
5 years ago
0
make remote cache location configurable by env variable
#33
ahwagner
closed
5 years ago
1
Some VCFWriter improvements
#32
susannasiebert
closed
5 years ago
0
adjust `get_all` routines to not return rejected elements by default
#31
ahwagner
closed
5 years ago
1
caching enhancements and get_all_evidence() function
#30
ahwagner
closed
5 years ago
3
warn user on call to save cache if no cache save location set
#29
ahwagner
closed
5 years ago
1
Rework how version tags are handled and upgrade to 1.0.0.rc1
#28
susannasiebert
closed
5 years ago
0
Update logic for how to annotate CIViC evidence in the CIViC VCF file
#27
susannasiebert
closed
5 years ago
0
Support configurable remote cache locations
#26
susannasiebert
closed
5 years ago
0
Get variant by name
#25
ahwagner
closed
4 years ago
0
Initial commit to set up coveralls coverage tracking
#24
susannasiebert
closed
5 years ago
1
Initial commit to set up coveralls coverage tracking
#23
susannasiebert
closed
5 years ago
0
Initial commit of .travis.yml file
#22
susannasiebert
closed
5 years ago
0
Make tests pass
#21
susannasiebert
closed
5 years ago
0
improve test coverage
#20
ahwagner
closed
4 years ago
0
add coverage tracking
#19
ahwagner
closed
5 years ago
0
add travisCI
#18
ahwagner
closed
5 years ago
0
Remote load cache
#17
ahwagner
closed
5 years ago
0
Analysis
#16
ahwagner
closed
5 years ago
0
validate coordinates
#15
ahwagner
opened
5 years ago
0
Issue 12
#14
ahwagner
closed
5 years ago
0
promote Source to first-class entity
#13
ahwagner
opened
5 years ago
0
enable coordinate searching
#12
ahwagner
closed
5 years ago
1
civic2clinvar issue 1
#11
ahwagner
closed
5 years ago
0
allow caching of all objects by time period
#10
ahwagner
closed
4 years ago
0
finish documentation
#9
ahwagner
closed
5 years ago
1
add CIViCpy to ProgrammableWeb directory
#8
ahwagner
opened
6 years ago
0
Issue 3
#7
ahwagner
closed
6 years ago
0
Issue 5
#6
ahwagner
closed
6 years ago
0
create recipe for extracting suggested HPO terms by variant
#5
ahwagner
closed
6 years ago
0
Support GRCH37 to 38 conversion
#4
kkrysiak
opened
6 years ago
2
create .vcf from variants
#3
ahwagner
closed
5 years ago
2
query for records by revision status
#2
ahwagner
closed
4 years ago
4
add contributions by user summarizations
#1
ahwagner
opened
6 years ago
0
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