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gui11aume
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starcode
All pairs search and sequence clustering
GNU General Public License v3.0
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Help with read grouping + UMI error correction
#47
jindalk
closed
1 year ago
3
Description of connected components clustering algorithm
#46
pol-delta
closed
1 year ago
2
Carryover of consensus instead of original sequence after UMI-Amplicon clustering
#45
vineeth-s
closed
1 year ago
1
Large Count File Dataset -- Memory Issues
#44
aportell18
opened
1 year ago
3
Fix bug in spheres clustering
#43
gui11aume
closed
2 years ago
3
Canonical (consensus) error
#42
vineeth-s
closed
2 years ago
9
Large dataset | memory error
#41
vineeth-s
closed
7 months ago
13
Mocked-up suggestion - outputting canonical cluster sequence per-read for use in bioinformatics pipelines
#40
darachm
closed
3 years ago
13
Fix TOWER_TOP declaration for GCC10
#39
vejnar
closed
3 years ago
2
Feature request - add a statistical cutoff for cluster merging?
#38
darachm
opened
3 years ago
2
Offending sequences
#37
kjkjindal
opened
4 years ago
1
compatible with split-seq data
#36
bettycatherine
closed
4 years ago
2
new release?
#35
raivivek
closed
4 years ago
4
Dealing with segmentation fault
#34
covidlearning
closed
3 years ago
16
Compatibility with inDrops data?
#33
kfontanez
opened
5 years ago
2
Clarification of message passing algorithm
#32
laurapspector
closed
5 years ago
1
No output with --connected-components algorithm
#31
laurapspector
opened
5 years ago
3
Does starcode allow/support for small indels ?
#30
cgirardot
closed
5 years ago
1
Provide conda installation
#29
cgirardot
closed
5 years ago
1
Feature Request: Tidy Output
#28
nlubock
opened
5 years ago
3
Report a bug about cluster distance
#27
zhangfei1947
opened
6 years ago
1
##1 mismatch by cluster
#26
penglbio
opened
6 years ago
7
support compressed FASTQ files
#25
argoat
closed
6 years ago
2
Transfer sequence ids is inefficient
#24
ezorita
closed
6 years ago
2
Overlapping spheres.
#23
ezorita
closed
6 years ago
1
Update request: spheres clustering
#22
ezorita
closed
6 years ago
1
PyStarcode
#21
rcortini
opened
6 years ago
3
First draft of "pystarcode" module
#20
rcortini
closed
6 years ago
1
clustering unique input sequences produces unexpected output
#19
rpadmanabhan
closed
6 years ago
4
--print-clusters bug with --sphere option
#18
nlubock
closed
6 years ago
2
Non-redundant only compatible with message passing
#17
ezorita
closed
7 years ago
0
--non-redundant input
#16
claudiuskerth
closed
7 years ago
4
Trie memory limit
#15
ezorita
opened
8 years ago
2
Clustering with UMIs
#14
pjsample
closed
8 years ago
2
allpairs output not congruent with sphere clustering output?
#13
claudiuskerth
opened
8 years ago
9
maximum distance of 8
#12
claudiuskerth
opened
8 years ago
2
edges of graph
#11
claudiuskerth
closed
8 years ago
2
cluster size
#10
claudiuskerth
closed
8 years ago
4
Eats barcodes
#9
histonemark
closed
7 years ago
0
Clustering algorithm sequence ratio
#8
ezorita
closed
7 years ago
0
Lookup search bug
#7
ezorita
closed
10 years ago
0
Fix idiotic non linking to getline.c
#6
gui11aume
closed
10 years ago
0
Fix thread issue with some old compilers
#5
gui11aume
closed
10 years ago
6
Separate leaves from internal nodes to reduce memory footprint
#4
gui11aume
closed
10 years ago
0
Document 'mergesort()'
#3
gui11aume
closed
10 years ago
0
Crash with mutex error
#2
gui11aume
closed
10 years ago
0
Input file memory not freed.
#1
ezorita
closed
8 years ago
0