guigolab ggsashimi issues

guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

MIT License

122 stars 42 forks source link

issues

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-S plus vs -S minus shows the same reads

#51 ahishsujay closed 3 years ago
7
error in R script portion

#50 feedmewifi closed 3 years ago
8
Fatal Python error: init_fs_encoding: failed to get the Python codec of the filesystem encoding

#49 feedmewifi closed 3 years ago
3
Improve split logic in gtf tags

#48 abreschi closed 3 years ago
1
Add support for gzipped gtf files

#47 abreschi closed 3 years ago
1
Add exception for GTF files with gene rows as well

#46 abreschi closed 3 years ago
2
Docker build error: package devtools is not available

#45 abreschi closed 3 years ago
6
ValueError: need more than 1 value to unpack

#44 nbbarrientos closed 4 years ago
4
How to generate transcript diagram at the bottom

#43 HeenaBioinfo closed 4 years ago
7
Add ability to test different versions of R and ggplot2 in Travis

#42 emi80 closed 4 years ago
0
Use output pdf for CI checksum test

#41 emi80 closed 4 years ago
0
Wrong colors when using the color-factor option without overlay or a palette file

#40 emi80 closed 4 years ago
0
Warnings when using -A mean_j (median_j)

#39 dgarrimar closed 4 years ago
1
No reads in the specified Area error

#38 padwalmk closed 4 years ago
6
No y scale

#37 silviaMDLab closed 4 years ago
5
AttributeError: 'NoneType' object has no attribute 'replace'

#36 archana433 closed 4 years ago
2
Sashimi plot read counts (above curves)

#35 hongsilv closed 4 years ago
1
Exons not displayed properly

#34 cavei closed 4 years ago
2
Error in seq.default(start, max(start + 1, end - 4), by = 2425)

#33 archana433 closed 4 years ago
9
IndexError: list index out of range

#32 archana433 closed 4 years ago
2
File "sashimi-plot.py", line 214, in intersect_introns a, b = next(it) StopIteration

#31 ghost closed 4 years ago
6
Fixed y scale

#30 didrikolofsson closed 4 years ago
1
UnicodeDecodeError: 'ascii' codec can't decode byte 0xef in position 790: ordinal not in range(128)

#29 mainpyp closed 4 years ago
7
Feature request: Add option for fixed y-axis scales

#28 didrikolofsson closed 4 years ago
3
Plot dimension too big

#27 PedroBarbosa closed 4 years ago
3
Error if BAM filename starts with number

#26 alexzaccaron closed 4 years ago
1
coordinate flag do not match with coordinate on x-axis of generated graph if using --shrink flag

#25 shannjiang closed 5 years ago
1
What's the difference between the flag -S OUT_STRAND and -s STRAND?

#24 shannjiang closed 5 years ago
4
Annotate gene symbol and exon number

#23 komalsrathi opened 5 years ago
6
Error in grid.Call.graphics

#22 emi80 closed 5 years ago
1
list of bams

#21 Minliuv18 closed 5 years ago
1
How to control the y axis with same range

#20 DadongZ closed 5 years ago
2
Error: unexpected symbol in " color_list = list(ConAc_A2-11D.sorted"

#19 sneha100895 closed 4 years ago
5
Color and label settings

#18 LucoLab closed 4 years ago
2
Check coordinate 0/1-indexing

#17 dgarrimar closed 4 years ago
0
Integration in Galaxy

#16 bellenger-l closed 5 years ago
5
Histogram smoothing possible?

#15 lukedow closed 5 years ago
3
Aggregation doesn't work with long genomic regions

#14 ramanktalwar closed 4 years ago
5
Shrinkage of introns leads to wrong coordinates in x-axis

#13 dgarrimar closed 4 years ago
2
Generate a BED file with the junction coordinates and split read counts on each BAM file

#12 dgarrimar closed 5 years ago
0
Overlapping Junction Counts

#11 nigel9155 opened 6 years ago
5
rpkm/tpm rather than median/mean reads

#10 mhassan opened 6 years ago
7
Error: unexpected '=' in " color_list = list(input_bam="

#9 GJSanchez closed 6 years ago
1
Unexpected input in " color_list = list(11_"

#8 belgravia closed 6 years ago
0
Density plots do not have Y axis with ggplot2 version greater than 2.2.1

#7 emi80 closed 6 years ago
2
Annotation and density plots are not aligned with ggplot2 version greater than 2.2.1

#6 emi80 closed 6 years ago
9
Change font size of transcript id when using `-gtf`

#5 ManavalanG closed 6 years ago
5
something missing in graphic

#4 lmanchon closed 6 years ago
12
Axes labels missing

#3 jlboat closed 6 years ago
1
KeyError: 'transcript_id' with Ensemble human annotation

#2 emi80 closed 3 years ago
21

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