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h3abionet
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TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
MIT License
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PacBio initial read counts and cutadapt-based trimming details missing from read tracking
#48
cjfields
opened
1 month ago
0
Update fluidigm-run.py to include sample sheet for PacBio
#47
NeginValizadegan
opened
2 months ago
0
Add options for priors
#46
cjfields
opened
3 months ago
2
Address pooling when doing chimera detection
#45
cjfields
opened
3 months ago
0
Initial trimming steps
#44
cjfields
opened
6 months ago
0
Initial QC steps
#43
cjfields
opened
6 months ago
0
Address warnings
#42
cjfields
opened
8 months ago
0
DSL1 is no longer supported
#41
cjfields
opened
11 months ago
0
Documentation cleanup
#40
cjfields
opened
1 year ago
1
Set up Dockstore
#39
cjfields
opened
1 year ago
1
Update Docker Github actions
#38
cjfields
opened
2 years ago
1
Set up Codacy for checklist FAIR compliance
#37
cjfields
closed
2 years ago
1
Shoreline data without primers appear to be in either orientation
#36
cjfields
opened
2 years ago
5
Reorganizing output directories
#35
cjfields
opened
2 years ago
1
Generation of large matrices and data frames takes forever
#34
cjfields
opened
2 years ago
2
Overall name changes
#33
cjfields
opened
2 years ago
3
Sporadic Docker build issues
#32
cjfields
opened
2 years ago
0
Implement alternative NovaSeq error models
#31
cjfields
opened
2 years ago
0
Fix CI
#30
cjfields
closed
2 years ago
0
Add software and R module versions
#29
cjfields
opened
2 years ago
0
CI seems broken
#28
cjfields
closed
2 years ago
4
Add howfairis badge
#27
grbot
closed
3 years ago
0
Create howfairis config and add FAIR software badge
#26
cjfields
closed
2 years ago
5
Add CITATION.cff
#25
cjfields
closed
2 years ago
1
Add to bio.tools
#24
cjfields
closed
2 years ago
3
Update standard config
#23
grbot
closed
3 years ago
1
Comment out PR code
#22
cjfields
closed
3 years ago
0
Take parameters for setDadaOpt from the command line
#21
wbazant
closed
3 years ago
2
Push docker image to GitHub
#20
grbot
closed
3 years ago
0
Add GitHub CI testing
#19
grbot
closed
3 years ago
1
Add Figaro?
#18
cjfields
opened
3 years ago
1
Implement Illumina single-end workflow
#17
cjfields
closed
1 year ago
3
GitHub Actions to build Docker images
#16
cjfields
closed
3 years ago
6
Migration from Travis-CI to GitHub Actions
#15
cjfields
closed
3 years ago
2
DSL2 migration
#14
cjfields
opened
3 years ago
2
Filtering merged reads by length
#13
cjfields
closed
3 years ago
2
Scaling some processes based on sample #
#12
cjfields
opened
3 years ago
0
ReadTracking seems broken with single sample runs
#11
cjfields
closed
1 month ago
3
invalid class “ShortRead” object: sread() and id() length mismatch
#10
grbot
closed
3 years ago
8
Add q2-feature-classifier as an option
#9
cjfields
opened
4 years ago
1
Update Singularity URL
#8
lvclark
closed
4 years ago
1
Check compatibility with R 4.0.
#7
cjfields
closed
2 years ago
2
Make pipeline work for 454 data
#6
kifeonu
opened
4 years ago
6
Dereplication no longer part of workflow in dada2 v1.12 and higher
#5
cjfields
closed
2 years ago
1
Read tracking issue
#4
cjfields
closed
2 years ago
2
Add MD5 support for ASV names
#3
cjfields
closed
4 years ago
1
Add PacBio support
#2
cjfields
closed
4 years ago
2
Fails with single sample runs
#1
cjfields
closed
4 years ago
2