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hall-lab
/
speedseq
A flexible framework for rapid genome analysis and interpretation
MIT License
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pysam 'pysam.calignmentfile.AlignedSegment' error using speedseq sv -g
#105
djakubosky
opened
7 years ago
6
V0.1.2 cram support
#104
ghost
closed
7 years ago
0
V0.1.2 cram support
#103
cc2qe
closed
7 years ago
0
A dot in the TUMOR FORMAT column
#102
iranmdl
opened
7 years ago
0
Speedseq somatic - slow speed
#101
iranmdl
closed
7 years ago
4
Installation of SpeedSeq by git error!
#100
wangshun1121
closed
7 years ago
2
segmentation fault with realign
#99
shukwong
opened
7 years ago
1
speedseq sv with -g does not genotype breakpoints
#98
shukwong
opened
7 years ago
0
Pass targets BED file to Freebayes
#97
sowmiu
opened
7 years ago
2
Version of Freebayes is still 0.9.21 instead of latest release version 1.0.0
#96
sowmiu
opened
7 years ago
1
Can SpeedSeq deal with species other than Homo Sapien?
#95
wangshun1121
opened
7 years ago
0
variant calls using exome?
#94
wisekh6
closed
7 years ago
2
minor README fix
#93
ahwagner
closed
7 years ago
0
about using GRCH38
#92
liminghao663
opened
7 years ago
4
structural variant calling (lumpy) error TypeError: %d format: a number is required, not numpy.float64
#91
crazyhottommy
closed
7 years ago
4
Compressing temporary files
#90
inti
opened
7 years ago
2
Continuing previous run
#89
inti
opened
8 years ago
0
Speedseq submitted via SGE Scheduler
#88
Phillip-a-richmond
opened
8 years ago
1
vawk ignoring PYTHON set in bin/speedseq.config
#87
andreas-wilm
opened
8 years ago
2
freebayes runaway process
#86
jgbaum
closed
7 years ago
3
Question about speedseq var
#85
JiongZ
closed
7 years ago
6
SpeedSeq SV doesn't run on re-aligned BAM files
#84
snamburi3
closed
8 years ago
4
speedseq sv failed
#83
xxzhou1
closed
8 years ago
0
RG not retained using realign
#82
jujubix
closed
8 years ago
1
somatic VEP missing variants on X (and Y etc.)
#81
mcieslik-mctp
closed
8 years ago
1
cnvator-multi compile issue
#80
MeeshCompBio
closed
8 years ago
1
cnvnator-multi error
#79
mswierniak
closed
8 years ago
1
could speedseq run WES or Panel with other Bed files
#78
yipukangda
closed
8 years ago
1
CNVnator-multi cannot compile with ROOT Release 6
#77
aflyhorse
opened
8 years ago
1
cnvnator eval error
#76
woodoo46
opened
8 years ago
1
Master
#75
bgistone
opened
8 years ago
0
sambamba-view: unable to write to stream
#74
crazyhottommy
opened
8 years ago
2
Can't find first and/or second of pair in sam block of length 2 for id
#73
walaj
closed
8 years ago
5
Parameter required for ID.
#72
rmande
closed
8 years ago
6
question about variat calling
#71
sunyanling
opened
8 years ago
7
Speedseq align stops at sambamba sort
#70
aliciab15
opened
8 years ago
3
Speedseq align stops at sambamba sort
#69
aliciab15
closed
8 years ago
0
speedseq SV is interrupted
#68
maofengbiao
opened
8 years ago
1
Any instances of speedseq being implemented/used in clinical lab(CLIA/CAP) setup?
#67
gpcr
closed
8 years ago
1
LumpySV failed on certain cases
#66
MagpiePKU
opened
8 years ago
1
Segmentation fault with Lumpy
#65
ghost
closed
8 years ago
1
sambamba-view: [zlib] unknown error; not enough data in stream
#64
stephenrdoyle
closed
8 years ago
2
Specifying VEP cache build
#63
vasiliosz
closed
8 years ago
2
how to run speedseq on cluster ?
#62
kongdeju
closed
8 years ago
2
Error in Making
#61
stegg
closed
8 years ago
8
speedseq sv- error in svtyper step
#60
djakubosky
closed
8 years ago
5
Running SpeedSeq with Phred+64 Illumina reads
#59
brettChapman
opened
8 years ago
3
speedseq run for WES data ?
#58
kongdeju
closed
8 years ago
1
How to use speedseq somatic
#57
bioxu
closed
8 years ago
2
speedseq somatic confusion
#56
kongdeju
opened
8 years ago
3
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